Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20370 937 / 0 AtMUR3, MUR3, KAM1 MURUS 3, KATAMARI 1, Exostosin family protein (.1) AT2G29040 549 / 0 Exostosin family protein (.1) AT4G13990 495 / 2e-170 Exostosin family protein (.1) AT2G32750 468 / 5e-160 Exostosin family protein (.1) AT2G32740 421 / 4e-142 ATGT13 ARABIDOPSIS GALACTOSYLTRANSFERASE 13, galactosyltransferase 13 (.1) AT2G31990 416 / 3e-140 Exostosin family protein (.1) AT1G68470 340 / 9e-111 Exostosin family protein (.1) AT5G62220 337 / 1e-108 ATGT18 glycosyltransferase 18 (.1) AT1G63450 337 / 5e-107 RHS8 root hair specific 8 (.1) AT5G41250 326 / 4e-104 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022862 [exp] 1140 / 0 AT2G20370 951 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Lus10016532 [exp] 543 / 0 AT2G29040 546 / 0.0 Exostosin family protein (.1) Lus10001578 [exp] 533 / 0 AT2G29040 566 / 0.0 Exostosin family protein (.1) Lus10004967 [exp] 530 / 0 AT2G29040 573 / 0.0 Exostosin family protein (.1) Lus10006694 [exp] 486 / 3e-166 AT4G13990 617 / 0.0 Exostosin family protein (.1) Lus10001028 [exp] 478 / 1e-163 AT4G13990 499 / 1e-173 Exostosin family protein (.1) Lus10010677 [exp] 457 / 1e-155 AT2G32750 497 / 7e-173 Exostosin family protein (.1) Lus10007426 [exp] 451 / 3e-153 AT2G32750 505 / 5e-176 Exostosin family protein (.1) Lus10007037 [exp] 434 / 2e-147 AT4G13990 540 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256200 [exp] 979 / 0 AT2G20370 964 / 0.0 MURUS 3, KATAMARI 1, Exostosin family protein (.1) Potri.009G032500 [exp] 547 / 0 AT2G29040 588 / 0.0 Exostosin family protein (.1) Potri.001G321000 [exp] 533 / 0 AT4G13990 660 / 0.0 Exostosin family protein (.1) Potri.014G147800 [exp] 521 / 5e-180 AT4G13990 534 / 0.0 Exostosin family protein (.1) Potri.001G381900 [exp] 351 / 8e-115 AT1G68470 528 / 0.0 Exostosin family protein (.1) Potri.001G382200 [exp] 348 / 1e-113 AT1G68470 530 / 0.0 Exostosin family protein (.1) Potri.001G105300 [exp] 337 / 3e-108 AT1G63450 653 / 0.0 root hair specific 8 (.1) Potri.012G130700 [exp] 320 / 2e-102 AT5G62220 626 / 0.0 glycosyltransferase 18 (.1) Potri.015G132600 [exp] 313 / 1e-99 AT5G62220 619 / 0.0 glycosyltransferase 18 (.1) Potri.001G120800 [exp] 277 / 2e-86 AT4G22580 593 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10024961 pacid=23178862 polypeptide=Lus10024961 locus=Lus10024961.g ID=Lus10024961.BGIv1.0 annot-version=v1.0 ATGGGCGGTTTGAAGTTCCTAACTAGACGCACAAGCAGACCTGCAACCACCGACGACGCACTGGAGCAGATGGATAAAGGAAATGGGAAAAACCAGCAGA ATCGAGTTTGTCTGTTAGCTTCCCTCTCTGCTTTCTTTTGGATTCTCTTACTTTACTTCCATTTCGTCGTCTTGTCCGGCCGTACATTCTCCGATCAGTC ACTGACCACCCTACAGTCCAACCCTCCGGCGGTGGACGATTTCAGAACCTCCTTCCCAAATCCGATCCCTAAAAAAGAGGTTGAAGAATCTGAATCAGAA TCCCCTCCTATCCCTAAATATGGAGAAAAATCCCTTCCAATCCCAGAAGTCACTGATGAAGAACCCCCCAAGAGTTTCACATTCACGAGAGCTCTTAGAA CGGTAGAGAACAAGACTGATAAGTGCGGCGGGAGGTATATCTATGTCCATAATTTGCCATCTAGGTTCAACGATGATATGTTGAAAGAGTGCAGGAGTTT GAGCTTGTGGACAAACATGTGTAAGTTCACTACCAATGCTGGTATGGGACCGCCGTTGGAGAATGTCGAAGGCGTGTTTTCGAATACAGGATGGTATGCG ACCAACCAGTTTGCTGTGGATGTGATCTTTAACAACAGGATGAAGCAGTATGATTGTTTGACGAATGATTCGTCCTTAGCTGCTGCGATATTTGTACCGT TCTATGCTGGTTTTGACATTGCAAGGTACCTTTGGGGCCATCCAATTTCGAGGCGAGATGCTGCTTCTCTTGATCTTGTGGATTGGCTGATGAAGAGACC CGAGTGGGAGATCATGCAAGGGAGGGATCATTTCTTGGTTGCAGGGAGAATCACTTGGGATTTCAGGAGATTGTCGGAGGAAGAAGGTGATTGGGGGAAT AAGCTTCTGTTCTTGCCTGCTGCAAAAAACATGTCGATGCTTGTCGTTGAATCGAGCCCCTGGAATGCTAATGATTTCGGGATCCCGTATCCGACTTATT TCCATCCTGCCAAGGATGCTGATGTGTTTGCTTGGCAGGAAAGGATGAGAAACTTGGAGAGGAAGTATTTGTTCTCCTTTGCCGGGGCACCACGTCCTGG TAATGCAAAGTCGATCCGAGGCCAGATCATAGACCAGTGCAGGAGTTCAAAAGTTGGGAAGCTGTTGGAATGCGATTTCGGGGAGAGCAAATGTCATTCT CCCAGCAGCATAATGCAGATGTTCCAGAGCTCCCTTTTCTGCTTGCAACCTCAGGGGGATTCATACACTCGAAGGTCGGCTTTCGATTCGATGCTGGCCG GTTGCATACCGGTGTTCTTCCATCCTGGTTCTGCTTACACGCAGTACACATGGCATCTTCCGAAGAACTACACGACTTACTCCGTGTTCATCCCTGAGGA CGACATCCGGAAGAGGAATCTCAGCATTGAGGAGAGGCTGAGTCAGATTCCTCCCGAGCAGGTCCGGATCATGAGGGAGAATGTCATCAAGCTGATCCCT CAGCTTATCTACGCGGACCCTCGTTCGAAGCTGGAGACTTTTAAAGACGCGTTCGATGTGGCAGTCCAGGCAGTGATCGATAAGGTGACGAGGCTGAGGA AGAACATGATCGAAGGGCGGACTGAGTACGACAACTTCGTCGAGGAGAACAGTTGGAAGTATGCCTTGCTGGAAGAAGGCCAGCGCGAGGTCGGAGGCCA TGAATGGGATCCGTTCTTCTCGAAACCGAAACCTAACGATGGTGGAGGTGGTACTGGCGGGGAATCATCTACTGGTTCGGTAGCAGAAGCTGCAAAGAAT TCATGGAAGAACGAGCAAAGAGATCAGAAATGA
AA sequence Show only first row Show all	>Lus10024961 pacid=23178862 polypeptide=Lus10024961 locus=Lus10024961.g ID=Lus10024961.BGIv1.0 annot-version=v1.0 MGGLKFLTRRTSRPATTDDALEQMDKGNGKNQQNRVCLLASLSAFFWILLLYFHFVVLSGRTFSDQSLTTLQSNPPAVDDFRTSFPNPIPKKEVEESESE SPPIPKYGEKSLPIPEVTDEEPPKSFTFTRALRTVENKTDKCGGRYIYVHNLPSRFNDDMLKECRSLSLWTNMCKFTTNAGMGPPLENVEGVFSNTGWYA TNQFAVDVIFNNRMKQYDCLTNDSSLAAAIFVPFYAGFDIARYLWGHPISRRDAASLDLVDWLMKRPEWEIMQGRDHFLVAGRITWDFRRLSEEEGDWGN KLLFLPAAKNMSMLVVESSPWNANDFGIPYPTYFHPAKDADVFAWQERMRNLERKYLFSFAGAPRPGNAKSIRGQIIDQCRSSKVGKLLECDFGESKCHS PSSIMQMFQSSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKNYTTYSVFIPEDDIRKRNLSIEERLSQIPPEQVRIMRENVIKLIP QLIYADPRSKLETFKDAFDVAVQAVIDKVTRLRKNMIEGRTEYDNFVEENSWKYALLEEGQREVGGHEWDPFFSKPKPNDGGGGTGGESSTGSVAEAAKN SWKNEQRDQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10024961 [exp]	0	1
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Lus10022862 [exp]	1.0	0.9370
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	3.5	0.8878
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10029216 [exp]	3.5	0.8596
AT4G31080			Protein of unknown function (D...		Lus10009547 [exp]	3.9	0.8494
AT2G42005			Transmembrane amino acid trans...		Lus10022995 [exp]	5.2	0.8666
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Lus10039265 [exp]	11.4	0.8115
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Lus10028710 [exp]	11.4	0.8277
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	17.0	0.8486
AT1G75140			unknown protein		Lus10007163 [exp]	18.0	0.8226
AT1G05850		CTL1, HOT2, ERH...	POM-POM1, SENSITIVE TO HOT TEM...		Lus10041278 [exp]	22.8	0.8099

Compare expression of checked genes

Lus10024961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.