Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62680 346 / 4e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 332 / 5e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G16640 326 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 331 / 2e-105 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G63080 319 / 4e-102 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G16710 314 / 2e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 318 / 3e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63150 317 / 6e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 317 / 8e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 315 / 3e-100 RPF2 rna processing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022861 [exp] 916 / 0 AT1G12700 370 / 7e-121 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10008593 [exp] 613 / 0 AT1G12700 400 / 7e-131 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014244 [exp] 606 / 0 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 603 / 0 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10003433 [exp] 556 / 0 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10029737 [exp] 461 / 4e-156 AT1G63130 424 / 6e-140 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042768 [exp] 458 / 7e-155 AT1G12700 418 / 8e-138 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014247 [exp] 439 / 4e-149 AT1G62930 340 / 3e-109 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003427 [exp] 431 / 8e-149 AT1G12700 291 / 8e-92 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G021200 [exp] 440 / 2e-149 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 437 / 1e-147 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 434 / 9e-147 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074700 [exp] 424 / 3e-144 AT1G62930 481 / 1e-164 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 427 / 6e-144 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G242500 [exp] 421 / 6e-142 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 420 / 4e-141 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G149800 [exp] 419 / 9e-141 AT1G12700 482 / 6e-162 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 418 / 1e-140 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 418 / 2e-140 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024962 pacid=23178888 polypeptide=Lus10024962 locus=Lus10024962.g ID=Lus10024962.BGIv1.0 annot-version=v1.0 ATGACGATGACAATCTTCTTCCATGGAAGCGGTTCTCGATTTCAACTTCGAAGGAAAGCGGGTATGGCTAAGCTTCCATTTTTTTCATCATCTACTTCTT CAGCTGCTTCAACAATGCCTCTTTCGCCTCATTTCATTTCCAAGCAGACCACCGCTCGTCGTTCCTCCGGTTCTCCTCCTTTCACCACCGTCGAAGCCGC GTTGGATTCATTCGATCGTATGCTCTGCATGAATCCGAGGCCTCATATTGCTGAATTCAGTCGGTTATTCACATCTCTTGTCGAATTGAACGCCTATACA GCTGCTGTGTCGGTATCCAGGCAAATGGAATTGGTTGGACTGCAATTAAATTATTTCACATTGAGTATGGTAATTCGTTGCTTCTGCAAATTGGGTAGTA TTGATTTTGCATTCTCGGTGTTAGGCAAAGTTTTTAAACTCGGTATTCCACCAAAATTTTTGAGATTCAGCTGTTTGATTGATGGATTGTGCAAACAAGG GGAAATTGCTGATGCGGTGAAGTGTTTAGGAAAGATTGTGGCTTTAGGATATCAGCCGAATGTCATCACTTACAATTCAATCATCAATGGTCTTTGTAAA CATGGGTTCGTAACTAAAGCCTTGGATTTTTTTCTTAAGATGAAGGATCGAAAATGTTCACCAAATGTTGTTAGTTACAGTTGTTTGATTCATGGTTTAT GCGTTCTAAGTCGGAGGAAAGAAGCAATGATGTTGTTGAATGAAATGGGAGAAACGAATATCGTTCCCAATGCATTCACCTATAGCATTTTGATTGATTC TTTCTGCAAAGATGGAATGGTTCTAGAGGCCAAAGCCATAGTTAAGATAATGATTCAAAGTGGACTGCATCCAGATATCGTCACATTCAGTTCATTGCTA GACGGATATTGTTTGCGTAACGAAATAGATAAAGCTCGTAAATTATTTGATTTTTTAGTCAGGGGAGGATGCAAGCCTAATGTTGTTACTTATAGTATTA TGATTAACGGATATTGTAAGAGTCAAAGGTTGGTTGAAGGCAAACAGTTGTTGAATGATATGCTTGAAAAGGATTTAGCTCCGCACATTGTTATATTTAA TACTCTGGTGGATGGATTCTGCCGAGCGGGGAGGCTTAAGGATGCTCAAGAACTTTTCAAAACAATGCGTGATCAAGGGCAGATTCCGAATGTCGTTACA TGTGGTAGTTTGCTAAGAGGCTGGTTCAGAATAGGTCAAGCAGATACAGCATTAGCTCTATTTGAAGAAATGGAGGGTAGTTGGTTGAAGCCTAATGTTG TCATCTATAGTATTCTTATTGATGGTTTGTGGAAAGCAGGGATGGTTAAGGAAGCACGAGACATGTTTTCTAGGCTTTGTAAAGACGAGAATTTACAGCC CGATGTCCGCGCATATAACATAGTAATAAATGGACTTTGTAGACATGGTTTAGTGGATGAAGCATTTGATTTGTTCAGAACAATGGAGAGAAGTTCGTCG TGTTTGCCAACTAACGTCTCTTACAATGTGATTATCCATGGGTTTCTTCTGACATAA
AA sequence Show only first row Show all	>Lus10024962 pacid=23178888 polypeptide=Lus10024962 locus=Lus10024962.g ID=Lus10024962.BGIv1.0 annot-version=v1.0 MTMTIFFHGSGSRFQLRRKAGMAKLPFFSSSTSSAASTMPLSPHFISKQTTARRSSGSPPFTTVEAALDSFDRMLCMNPRPHIAEFSRLFTSLVELNAYT AAVSVSRQMELVGLQLNYFTLSMVIRCFCKLGSIDFAFSVLGKVFKLGIPPKFLRFSCLIDGLCKQGEIADAVKCLGKIVALGYQPNVITYNSIINGLCK HGFVTKALDFFLKMKDRKCSPNVVSYSCLIHGLCVLSRRKEAMMLLNEMGETNIVPNAFTYSILIDSFCKDGMVLEAKAIVKIMIQSGLHPDIVTFSSLL DGYCLRNEIDKARKLFDFLVRGGCKPNVVTYSIMINGYCKSQRLVEGKQLLNDMLEKDLAPHIVIFNTLVDGFCRAGRLKDAQELFKTMRDQGQIPNVVT CGSLLRGWFRIGQADTALALFEEMEGSWLKPNVVIYSILIDGLWKAGMVKEARDMFSRLCKDENLQPDVRAYNIVINGLCRHGLVDEAFDLFRTMERSSS CLPTNVSYNVIIHGFLLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10024962 [exp]	0	1
AT1G18390			Protein kinase superfamily pro...		Lus10027117 [exp]	5.3	0.8691
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	6.1	0.8837
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	9.9	0.8417
AT3G27340			unknown protein		Lus10022323 [exp]	12.8	0.8553
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023021 [exp]	15.3	0.8487
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	17.7	0.8562
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10041759 [exp]	20.0	0.8386
AT2G17787			unknown protein		Lus10013567 [exp]	20.0	0.8529
AT1G33780			Protein of unknown function (D...		Lus10001286 [exp]	21.2	0.8512
AT2G17787			unknown protein		Lus10017274 [exp]	21.4	0.8531

Compare expression of checked genes

Lus10024962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.