Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20362 50 / 1e-08 unknown protein AT1G63310 40 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022860 [exp] 182 / 2e-58 AT2G20362 49 / 2e-07 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G256100 [exp] 54 / 3e-10 AT2G20362 62 / 3e-13 unknown protein Potri.002G034700 [exp] 40 / 0.0003 AT1G75260 183 / 4e-51 oxidoreductases, acting on NADH or NADPH (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024963 pacid=23178960 polypeptide=Lus10024963 locus=Lus10024963.g ID=Lus10024963.BGIv1.0 annot-version=v1.0 ATGGGAGCAGAAACTTACGAAGATGACTACTTCCATGAATTGAACCTTGAAGGAAAGAATGATGGTGCAACAATGTACATTCAGTCTGGTTCCTCATCCG CAGAGCTTCAACCAGGTGTCTGCATCAACATCTACGTGAACAACAATGTTCAAGGGGTGAACAACTCCATGGTGATGCAAAGTGACGTCAAGATGACGAA TCCCGGCGTTGCCATCTACCTAGATGGCCTCAAGCTTGGCAAAAGAGTGAAACAGAAGAAGGCACCATGTCGACTGTCAAAGAGGAAATGCAGTAAATCG GGAGAAGTGATGATCTCAAGATCAGATTCTAAATTAGGGGAAGAAGTAGAGGTTTCGAGATCAGATTCTCAGTTAGGGTTTGCTGCACTCCCTAGGTTGC TTCTTTTCTCTGTGGTTTTCTTCCCAGCTTTTGTGTTCATGTCATTCATATAA
AA sequence Show only first row Show all	>Lus10024963 pacid=23178960 polypeptide=Lus10024963 locus=Lus10024963.g ID=Lus10024963.BGIv1.0 annot-version=v1.0 MGAETYEDDYFHELNLEGKNDGATMYIQSGSSSAELQPGVCINIYVNNNVQGVNNSMVMQSDVKMTNPGVAIYLDGLKLGKRVKQKKAPCRLSKRKCSKS GEVMISRSDSKLGEEVEVSRSDSQLGFAALPRLLLFSVVFFPAFVFMSFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20362			unknown protein		Lus10024963 [exp]	0	1
AT1G76770			HSP20-like chaperones superfam...		Lus10028577 [exp]	1.0	0.9769
AT1G54400			HSP20-like chaperones superfam...		Lus10013655 [exp]	1.4	0.9661
					Lus10035158 [exp]	3.0	0.9471
					Lus10037173 [exp]	4.6	0.9585
AT1G47271			Cystathionine beta-synthase (C...		Lus10001964 [exp]	6.0	0.9526
AT1G27180			disease resistance protein (TI...		Lus10007831 [exp]	6.3	0.9543
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10020191 [exp]	7.1	0.9460
AT1G76770			HSP20-like chaperones superfam...		Lus10018882 [exp]	7.4	0.9459
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000547 [exp]	8.4	0.8707
					Lus10035810 [exp]	8.5	0.9124

Compare expression of checked genes

Lus10024963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.