Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20360 564 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022859 [exp] 786 / 0 AT2G20360 570 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255900 [exp] 654 / 0 AT2G20360 598 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G193300 [exp] 634 / 0 AT2G20360 570 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05368 [flax] [poplar] NmrA NmrA-like family
Representative CDS sequence Show only first row Show all	>Lus10024964 pacid=23178855 polypeptide=Lus10024964 locus=Lus10024964.g ID=Lus10024964.BGIv1.0 annot-version=v1.0 ATGCAGGCGATATCGAGGCGATTAGGGCACCAATACTTGAAGCCCGGAGCTTCAATCTCCTCTCTCAAATCGATCTACCCACTCTCTGATCACTATTATG GAGTTGAGAATCCGCGTTACGTGTCCACCATCACGCCCAAGGGCGTCGGCCACCTTGTTAGGAAAGGTACTGGAGGGAGATCGTCCGTCAGTGGAATCGT TGCGGCAGTCTTTGGAGCTACGGGTTTCTTAGGTCGTTATGTTGTGCAGCAACTTGCTAAAATGGGATCTCAGGTTTTAGTCCCCTTTCGTGGGTGTGAA GATGACAACAGGCACCTTAAACTGATGGGAGATTTGGGTCAGGTAGTACCCATGCAATTCAACCCAAGAGATGAGGCTTCCATTAAGGCTGTAATGGCCA AGGCTAATGTTGTCATTAATCTTATCGGAAGGGAATACGAAACACGGAATTACAGCTTTGAAGAAGTGAACCATGGCATGGCTGAAAAGTTTGCAACGAT TGCAAAAGAACATGGAGGTATCATGAGGTTCATTCAGGTGTCTTGTTTGGGAGCTTCATCGTCATCTCCTTCAAGATATCTGAAGGCTAAGGCAGCTGCA GAAAAAGCTGTTCTAAGAGAGCTACCTGAGGCGACAGTTTTGAGGCCTGCTACAATGATCGGTACAGAGGATCGTATGTTGAACACATGGGCTCACTTCG CCAAGAAGTATTCATTTGTTCCGTTCTTTGGAGATGGATCTGTCAAGTTTCAACCTGTATATGTTATCGATGTTGCTGGTGCGGTCGTTGCAGCTTTGAA AGATGATGGGTCCAGTATGGGAAAAGTTTATGAGCTTGGTGGGCCAGAAATCTTCACCATGCACGAACTGGCAGAACTCATGTTTGAGACAATCCGTGAA TATCCTCGCTATGTGAAAATTCCGCTGCCTATTGCAAAGGCTGTTGCCTCGCCAAGAGAGTTCCTCCTTAATAAGGTTCCATTTCCCTTGCCTACACCAA GTGTCTTCAACCTCGATAAGATCAAGGCAGTTTCATCAGATACGCTAGTTTCCGACAACGCTTTAACATTCCATGATCTTGGGATTGAGCCACATAAACT AAGGGGATACCCTATTGAGTTCCTCTTGTCATACCGCAAGGGTGGCCCGCAATTCGGTTCTACAGTCAGTGAAGGAATCTCCCCGGACAGGTTTCAATAG
AA sequence Show only first row Show all	>Lus10024964 pacid=23178855 polypeptide=Lus10024964 locus=Lus10024964.g ID=Lus10024964.BGIv1.0 annot-version=v1.0 MQAISRRLGHQYLKPGASISSLKSIYPLSDHYYGVENPRYVSTITPKGVGHLVRKGTGGRSSVSGIVAAVFGATGFLGRYVVQQLAKMGSQVLVPFRGCE DDNRHLKLMGDLGQVVPMQFNPRDEASIKAVMAKANVVINLIGREYETRNYSFEEVNHGMAEKFATIAKEHGGIMRFIQVSCLGASSSSPSRYLKAKAAA EKAVLRELPEATVLRPATMIGTEDRMLNTWAHFAKKYSFVPFFGDGSVKFQPVYVIDVAGAVVAALKDDGSSMGKVYELGGPEIFTMHELAELMFETIRE YPRYVKIPLPIAKAVASPREFLLNKVPFPLPTPSVFNLDKIKAVSSDTLVSDNALTFHDLGIEPHKLRGYPIEFLLSYRKGGPQFGSTVSEGISPDRFQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20360			NAD(P)-binding Rossmann-fold s...		Lus10024964 [exp]	0	1
AT1G07380			Neutral/alkaline non-lysosomal...		Lus10005873 [exp]	1.0	0.8120
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10022834 [exp]	1.4	0.7970
AT3G12570		FYD	FYD (.1.2.3.4)		Lus10040301 [exp]	8.0	0.6928
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10032234 [exp]	13.8	0.6689
AT3G18860			transducin family protein / WD...		Lus10040490 [exp]	17.9	0.7181
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Lus10025050 [exp]	25.5	0.6922
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	26.4	0.7671
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10011379 [exp]	26.7	0.7315
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10009539 [exp]	54.8	0.7160
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	67.7	0.6877

Compare expression of checked genes

Lus10024964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.