Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04120 2107 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13080 1251 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13100 1194 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G60160 1190 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G13090 1189 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G60970 1179 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G59140 981 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G62700 966 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT2G47800 959 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G21250 958 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022858 [exp] 2172 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10018027 [exp] 1201 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 1194 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10013201 [exp] 1155 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10039320 [exp] 1003 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 1003 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10023139 [exp] 958 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10030716 [exp] 957 / 0 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10004896 [exp] 954 / 0 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255800 [exp] 1932 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.014G193400 [exp] 1910 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.001G362300 [exp] 1290 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 1256 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.014G180100 [exp] 1254 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.003G198401 [exp] 1214 / 0 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 1214 / 0 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124606 [exp] 1211 / 0 AT3G13080 1830 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 1211 / 0 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197101 [exp] 1207 / 0 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10024965 pacid=23178917 polypeptide=Lus10024965 locus=Lus10024965.g ID=Lus10024965.BGIv1.0 annot-version=v1.0 ATGGGTTCTTCGTATTGGGTGGTTGATAATCACTATTGGCTATCATTTCATCACACTCTCTGGGAAACAATCCACGGCATTCCCGTCTTGGAACTCACCT CAATTTGCGTCAATTTGACACTCTTTCTGGTGTTCCTGTTGATCATCTTTGCGAGGAAGCTTTCTTTATGTGTTGGGAGGACCAGACTGCTCAAAGATGA TGCCTCTTCGGTTGCCAGCTCTAGCCCAATTCGACGGGCTAGTATTGCGGATGGAGAGACTCGTGAGATTGTTGTGGGCACTATGTTCAAGTTCTCTTTG TTTTGCTGCTTCTATGTCTTGTTTCTCCAGCTTTTGGTGCTGGGATACGATGGCTTTGTTCTGGTTAGAGATTCGGTTGGTGGGGAAGTCCAGGACTGGA CCGTGCTTTGCTTGCCTGCTTCTCAAGGCTTAACATGGCTTCTCTTGAGCTCTTGGGCTCTTCATTGTAAATTCCACGCATGTGAGAAGTTCCCGGTGTT GCTAAGAATATGGTGGGTGTTCTCATTTCTGATGTGCTTGTGTACTTTGTATGTGGACTGGAGGAGCCTTCTGACGGACGGTTACGGGCATCTGAATGCT ACAGTTGTGGTGAATTTTGCTGCAACACCTGCCATGGCTTTTCTATCTTTTCTTTCGACCAGAGGGGTTACTGGCATAGAAGTTCTGAGAAACTCTGACC TTCAAGAGCCATTGCTTCTGGAAGAAGACCCTGCATGTCTCAGGATAACTCCTTACAGTGATGCTGGGTTCTTTAGCGTGCTCACTCTCTCTTGGTTGAA CCCACTGCTTTCCACTGGTGCAAAGAGACCGCTAGAGCTGAAGGACATTCCCTTGCTTGCACCAGAAGATCGAGCGAAAGCCAATTTTAAGCTTTTGAAT TCAAACTGGGAGAAAATGAAGGCTGATAATCCTTCAAAGCAACCTTCTTTAGCTATGGCAATTCTGAAGTCTTTTTGGAGGGAAGCATTTCGTAATGCCA TCTTTGCCCTGTTGAACACTGTTGTCTCTTATGTTGGCCCATACTTGATTAGCTACTTTGTGGAGTTTTTTTTTTTTGTTAACTATATGGCAGTTGATGT CCAGAGAGTAGGGGATTACTCTTGGTATCTTCACGATATATGGATGCTTCCCTTGCAGATTATATTGGCTCTGGCAATTTTGTATAAGAATGTTGGAATT GCTGCAGGAGCAACTTTACTTGCCACCATCTTCTCTATTGTGGTAACCATTCCTCTTGCTAGGCTGCAAGAAAACTATCAGGATAAACTAATGGCTGCAA AGGATGAAAGAATGAGGAAGACTTCTGAGTGCCTGAGGAACATGAGGATCCTGAAGCTGCAGGCTTGGGAGGATAGGTATCGACTGCAGTTGGAGGAAAT GCGGAGTGTGGAATTCAAGTGGCTCCAAAAAGCCCTTTATTCACAATCCTTCATAACTTTCTTCTTCTGGAGCTCTCCTATATTTGTTGCTGTTGTCACT TTCGGTACTTCTATATTGCTGGGTGGTCAGCTAACAGCTGGAAGCGTGCTTTCATCACTGGCCACTTTCAGAATTCTGCAGGAGCCACTCAGAAACTTCC CGGACTTGGTTTCTATGATGGCCCAGACTAAAGTATCCCTTGATCGACTTTCTACATTCCTGCAAGAGGAAGAGTTGAGCGAAGATGCCACCATTGTGCT ACCACGAGGTACAACTCCCTTTGCAATTGAGATTAAAGATGGTGAGTTCTCCTGGACCCCTACGGTTCCAATGCCCACCTTATCGGGGATACAAATGAAA GTGCAAAAAGGAATGCGTGTAGCTGTTTGTGGAAAAGTTGGCTCTGGTAAATCAAGCTTCCTCTCGTGCATTCTGGGCGAGATACCAAAATTATCTGGTG AAGTGCGAATATGTGGGTCTGCTGCTTATGTTCCCCAGTCTGCTTGGATACAATCTGGAAATATTGAAGAAAATATCCTATTTGGCAGTCCAATGGACAA GCCCAAGTATAAAGCAGTTATTCATGCTTGTTCACTCAAAAAGGATTTGGAACTTTTCTCACACGGGGATCAGACCATTATTGGGGATCGGGGTATAAAT TTAAGCGGTGGTCAAAAGCAAAGAGTTCAGCTTGCAAGAGCGCTTTATCAAGATGCAGATGTTTATTTGCTTGATGATCCTTTCAGTGCTGTTGATGCAC ATACTGGTTCAGAATTGTTTAAGGAATACATATTAACAGCACTAGCAGCTAAAACTGTGATTTACGTGACTCACCAAGTTGAGTTCTTGCCAGCTGCAGA TCTAATATTGGTTCTTAAGGAAGGTCAGATTACACAAGCAGGTAGGTACGAGGAGCTTCTACGAGCAGGAACGGATTTCATCAGTTTGGTCTCTGCTCAC CAGGAAGCAATTGGAGCTATGGATATTCCTATTCATTCGACAGACGATTCAGATGACGGTGTGGCTTTGGATGGTCCTATCATGCTTCATAAAAAGTGTG AAGCATCTGTAAGTAATGTTGACAATCTTGCAAAAGAAGTGCAAGAAACTGCAGCTTCTTCAGATCAGAAAGCAGTGAAAGAGAAAAAGAAAGTAAAACG TTCGAGGAAGAAACAACTTGTTCAAGAGGAGGAAAGGGTTAGGGGAACAGTAAGCATGAAGGTCTATTTGTCATATATGGCTGCAGCATATAAGGGACTG TTGGTTCCCCTCATACTCCTATCACAAGCGCTATTTCAATTTCTTCAAATAGCTAGTAATTGGTGGATGGCTTGGGCAAATCCCCAGATGGAAGGAGGAG AAGCGAAAGTGAGTCCGATGGTCCTACTTGGTGTTTATATGGCCCTTGCTTTTGGGAGCTCGGTGTTTATACTTTCCAGGGCTGTTTTGGTTGCTACATT TGGTTTAGCTGCTGCACAGAAGTTGTTTCTGATGATGCTTAGAAGCGTGTTTCGATCACCTATGTCTTTCTTCGACTCTACTCCAGCTGGACGGATCTTG AATCGTGTATCTGTTGACCAAAGTGTTGTTGATCTGGATATACCTTTTAGACTTGGTGGCTTTGCTTCAACAACAATACAACTTATTGGAATCGTTGCTG TAATGACACAAGTGACTTGGCAAATTTTGCTTCTTGTTATTCCAATGGCTATAGCATGCCTATGGATGCAGAAATACTACATGGCTTCATCAAGGGAACT AGTTCGCATCGTCAGCATCCAGAAGTCTCCTGTCTTCCATCTTTTCAGCGAGTCCATTGCTGGAGCCGCCACTATAAGAGGTTTTGGGCAAGAGAAAAGG TTCATGAAAAGGAATCTTTATCTTCTTGACTGTTTCACTCGCCCGTTCTTCTGCAGTCTGGCGGCTATCGAGTGGCTCTGTCTGCGCATGGAACTACTGT CAACCTTCGTATTTGCTTTCTGCATGCTTTTGCTCGTAAGCTTTCCCCATGGAAGCATCGATCCAAGTATGGCAGGCCTTGCTGTGACATATGGCCTTAA TCTTAATGCTCGTCTGTCACGATGGATACTTAGCTTTTGCAAGGTTGAAAACAAAATCATTTCCATAGAAAGGATATATCAATATAGCAGAATTTCAAGT GAAGCACCAGCAATTATAGAGGAGTCTCGCCCACCATCCTTATGGCCGGAGAATGGACAAATTGACATAATTGATTTGAAGGTCCGTTATGGTGAGAATC TCCCTATGGTGCTTCATGGGGTATCCTGCAGCTTTCCAGGTGGGAAGAAGATTGGAATTGTTGGGAGAACCGGTAGTGGAAAATCTACACTGATCCAGGC CTTGTTTCGGTTAATCGAACCAGCTGGTGGAAGAATCATCATAGACAACATCGATATTTCAAAGATTGGGCTCCATGATCTTCGTAGCCGCCTCAGTATC ATTCCTCAAGATCCAACCTTGTTTGAAGGAACCATTAGGGGAAATCTCGATCCTCTTGAGGAGCACACTGATCAGGAAATCTGGCAGGCTCTAGATAAGT CTCAACTTGGTGATGTAATCAGGGAGAAAGATGAAAAACTTGATGCGCCAGTTCTAGAAAATGGAGATAACTGGAGCGTGGGACAGAGGCAACTTGTTGC ACTAGGGCGTGCGTTGCTCAAACAGGCCAGAATACTGGTACTAGATGAAGCAACAGCATCAGTCGACACGGGTACAGACAATCTTATCCAGAAGATTATC CGGACAGAGTTCAAGAACTGCACTGTCTGCACAATTGCTCACCGCATCCCAACAGTCATTGACAGTGATCTGGTTTTGGTACTAAGCGACGGTCGTGTCA CTGAGTTTGATACTCCAACTCGGTTGTTAGAGGATAAATCGTCCATGTTCCTAAAACTGGTCACTGAATACTCGTCAAGGTCAAATGGCATACCTGACTT CTAA
AA sequence Show only first row Show all	>Lus10024965 pacid=23178917 polypeptide=Lus10024965 locus=Lus10024965.g ID=Lus10024965.BGIv1.0 annot-version=v1.0 MGSSYWVVDNHYWLSFHHTLWETIHGIPVLELTSICVNLTLFLVFLLIIFARKLSLCVGRTRLLKDDASSVASSSPIRRASIADGETREIVVGTMFKFSL FCCFYVLFLQLLVLGYDGFVLVRDSVGGEVQDWTVLCLPASQGLTWLLLSSWALHCKFHACEKFPVLLRIWWVFSFLMCLCTLYVDWRSLLTDGYGHLNA TVVVNFAATPAMAFLSFLSTRGVTGIEVLRNSDLQEPLLLEEDPACLRITPYSDAGFFSVLTLSWLNPLLSTGAKRPLELKDIPLLAPEDRAKANFKLLN SNWEKMKADNPSKQPSLAMAILKSFWREAFRNAIFALLNTVVSYVGPYLISYFVEFFFFVNYMAVDVQRVGDYSWYLHDIWMLPLQIILALAILYKNVGI AAGATLLATIFSIVVTIPLARLQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRLQLEEMRSVEFKWLQKALYSQSFITFFFWSSPIFVAVVT FGTSILLGGQLTAGSVLSSLATFRILQEPLRNFPDLVSMMAQTKVSLDRLSTFLQEEELSEDATIVLPRGTTPFAIEIKDGEFSWTPTVPMPTLSGIQMK VQKGMRVAVCGKVGSGKSSFLSCILGEIPKLSGEVRICGSAAYVPQSAWIQSGNIEENILFGSPMDKPKYKAVIHACSLKKDLELFSHGDQTIIGDRGIN LSGGQKQRVQLARALYQDADVYLLDDPFSAVDAHTGSELFKEYILTALAAKTVIYVTHQVEFLPAADLILVLKEGQITQAGRYEELLRAGTDFISLVSAH QEAIGAMDIPIHSTDDSDDGVALDGPIMLHKKCEASVSNVDNLAKEVQETAASSDQKAVKEKKKVKRSRKKQLVQEEERVRGTVSMKVYLSYMAAAYKGL LVPLILLSQALFQFLQIASNWWMAWANPQMEGGEAKVSPMVLLGVYMALAFGSSVFILSRAVLVATFGLAAAQKLFLMMLRSVFRSPMSFFDSTPAGRIL NRVSVDQSVVDLDIPFRLGGFASTTIQLIGIVAVMTQVTWQILLLVIPMAIACLWMQKYYMASSRELVRIVSIQKSPVFHLFSESIAGAATIRGFGQEKR FMKRNLYLLDCFTRPFFCSLAAIEWLCLRMELLSTFVFAFCMLLLVSFPHGSIDPSMAGLAVTYGLNLNARLSRWILSFCKVENKIISIERIYQYSRISS EAPAIIEESRPPSLWPENGQIDIIDLKVRYGENLPMVLHGVSCSFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAGGRIIIDNIDISKIGLHDLRSRLSI IPQDPTLFEGTIRGNLDPLEEHTDQEIWQALDKSQLGDVIREKDEKLDAPVLENGDNWSVGQRQLVALGRALLKQARILVLDEATASVDTGTDNLIQKII RTEFKNCTVCTIAHRIPTVIDSDLVLVLSDGRVTEFDTPTRLLEDKSSMFLKLVTEYSSRSNGIPDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	0	1
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10022858 [exp]	1.0	0.9330
AT5G62620			Galactosyltransferase family p...		Lus10037238 [exp]	2.0	0.9157
AT4G29900		CIF1, ATACA10, ...	COMPACT INFLORESCENCE 1, autoi...		Lus10001638 [exp]	2.0	0.9300
AT2G26100			Galactosyltransferase family p...		Lus10023955 [exp]	3.0	0.9263
AT1G18670		IBS1	IMPAIRED IN BABA-INDUCED STERI...		Lus10015727 [exp]	3.9	0.9151
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Lus10038106 [exp]	4.2	0.8983
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	4.6	0.9010
AT1G28420	HD	HB-1	homeobox-1 (.1)		Lus10015325 [exp]	6.0	0.8908
AT3G03790			ankyrin repeat family protein ...		Lus10013648 [exp]	6.3	0.8956
AT5G04480			UDP-Glycosyltransferase superf...		Lus10028829 [exp]	8.1	0.8920

Compare expression of checked genes

Lus10024965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.