Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20340 707 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G28680 619 / 0 TYRDC, TYRDC1 L-TYROSINE DECARBOXYLASE 1, L-tyrosine decarboxylase (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022856 [exp] 880 / 0 AT2G20340 794 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10018522 [exp] 514 / 8e-180 AT2G20340 569 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10039740 [exp] 498 / 1e-173 AT2G20340 568 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G255600 [exp] 756 / 0 AT2G20340 753 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052900 [exp] 516 / 0 AT2G20340 555 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.016G114300 [exp] 513 / 5e-180 AT2G20340 552 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.013G052800 [exp] 512 / 2e-179 AT2G20340 553 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.004G036200 [exp] 505 / 3e-176 AT2G20340 596 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain
Representative CDS sequence Show only first row Show all	>Lus10024966 pacid=23178995 polypeptide=Lus10024966 locus=Lus10024966.g ID=Lus10024966.BGIv1.0 annot-version=v1.0 ATGGGAGGTTACAGAAGCTTAAATCTTATTTTTATTTTCATTTCTTTTGTTGCAGATATTCGGGATTTAGGGTATAACACCAAGGAAGGGGATGATGGTG GAGGAGCGTTGAAGCCGATGGACGCAGAGCAACTGAGACAGAATGCACACCAGATGGTTGATTTCATTGCTGACTACTACAAGAACATTGAGACTTACCC TGTTCTCAGCCAAGTTGAGCCTGGTTATTTGAGGGAGCTACTGCCTGATTCTGCACCAAATAGACCTGAATCTTTGCAAAGTGTTCTTGATGATGTGCAG TCGAAGATAATGCCCGGAGTGACTCATTGGCAAAGTCCCAACTACTTTGCTTATTATCCTTCCAACAGTAGCGTTGCAGGATTCTTAGGAGAAATGCTTA GTGCTGGGATTAACATGGTTGGTTTCAGCTGGATAACTTCCCCTGCTGCCACTGAGCTTGAGATGATTGTGCTCGATTGGCTCGGCAAGCTGCTTAAACT ACCTGAGGAGTTCCTCTCATCAGGACATGGCGGTGGAGTGATACAAGGTACTGCAAGTGAAGCTATTCTGGTTGTACTATTGGCTGCTCGTGATAAGATG TTGAGGAAGTTCGGGAAAAGCGCTCTTGAAAAGCTTGTTGTTTATGCATCTGATCAAACACATTCCGCACTGCAGAAAGCCTGCCAGATAGGTGGGATTT ATCCGGAAAATTGTCGGCTGCTGAAAACAGACTCCTCAGTGAATTATTCCCTCACTCCGGAATTAGTTAGTGAAGCAGTTTCACAGGACATTTCTGCTGG ATTGATTCCCTTCTTTCTATGTGGAACTGTTGGCACAACTTCATCAGCAACTGTTGATCCCTTGGGTACACTGGGGAAGATCGCCAAGAATAACGACATG TGGTTTCATGTGGATGCTGCATACGCTGGAAGTGCTTGCATATGTCCAGAATACCGCCAGTACCTCGATGGTGTCGAAGAAGCAGACTCTTTCAACATGA ATGCGCACAAATGGTTCTTAACAAATTTCGACTGCTCAACCCTTTGGGTCAAGGACAAAAGTGCTCTTATCCAGGCCCTCTCCACGAATCCAGAATTTCT AAAGAACAAGGCCTCACAAGCAAACTTGGTGGTGGATTATAAAGACTGGCAAATTCCTCTTGGACGTCGGTTTAGGTCATTGAAGCTTTGGATGGTACTA CGACTATACGGTGTGGAGAATCTTCAGCAATACCTAAGAAACCATATCGAGTTAGCACGACATTTCGAAGAGTGTGTTAACCATGATCCGAGATTTGAGG CTCTATCGGGGAAGTACACGTTGCGAGTTGCGATAGGGGCACCGTTGACAGAGAAGAGACATGTAGCTGCAGCTTTGAAAGTGCTACAAGATGAGGCAAC TTCTCTGCTAGTGGCCACTTCTCCACTGCTTGAAAATGGAAACTCGTCTTAG
AA sequence Show only first row Show all	>Lus10024966 pacid=23178995 polypeptide=Lus10024966 locus=Lus10024966.g ID=Lus10024966.BGIv1.0 annot-version=v1.0 MGGYRSLNLIFIFISFVADIRDLGYNTKEGDDGGGALKPMDAEQLRQNAHQMVDFIADYYKNIETYPVLSQVEPGYLRELLPDSAPNRPESLQSVLDDVQ SKIMPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGINMVGFSWITSPAATELEMIVLDWLGKLLKLPEEFLSSGHGGGVIQGTASEAILVVLLAARDKM LRKFGKSALEKLVVYASDQTHSALQKACQIGGIYPENCRLLKTDSSVNYSLTPELVSEAVSQDISAGLIPFFLCGTVGTTSSATVDPLGTLGKIAKNNDM WFHVDAAYAGSACICPEYRQYLDGVEEADSFNMNAHKWFLTNFDCSTLWVKDKSALIQALSTNPEFLKNKASQANLVVDYKDWQIPLGRRFRSLKLWMVL RLYGVENLQQYLRNHIELARHFEECVNHDPRFEALSGKYTLRVAIGAPLTEKRHVAAALKVLQDEATSLLVATSPLLENGNSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10024966 [exp]	0	1
AT4G37220			Cold acclimation protein WCOR4...		Lus10012035 [exp]	3.2	0.8657
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	3.5	0.8770
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10022398 [exp]	4.6	0.8683
AT4G37220			Cold acclimation protein WCOR4...		Lus10027945 [exp]	8.0	0.8483
AT5G10470		KAC1, KCA1	KINESIN CDKA;1 ASSOCIATED 1, k...		Lus10035940 [exp]	8.8	0.8769
AT5G04420			Galactose oxidase/kelch repeat...		Lus10028825 [exp]	9.8	0.8432
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	10.4	0.8679
AT1G27070			5'-AMP-activated protein kinas...		Lus10036706 [exp]	11.0	0.7868
AT1G18160			Protein kinase superfamily pro...		Lus10038955 [exp]	14.4	0.8144
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	15.2	0.8497

Compare expression of checked genes

Lus10024966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.