Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62440 90 / 1e-20 Protein of unknown function (DUF3223) (.1) AT1G45230 46 / 2e-05 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) AT2G40030 45 / 9e-05 NRPE1, DMS5, ATNRPD1B, DRD3, NRPD1b DEFECTIVE IN MERISTEM SILENCING 5, nuclear RNA polymerase D1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009570 [exp] 570 / 0 AT5G62440 88 / 7e-20 Protein of unknown function (DUF3223) (.1) Lus10024794 [exp] 496 / 2e-174 AT5G62440 95 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10024824 [exp] 421 / 6e-146 AT5G62440 84 / 8e-19 Protein of unknown function (DUF3223) (.1) Lus10011903 [exp] 411 / 7e-140 AT5G62440 96 / 1e-22 Protein of unknown function (DUF3223) (.1) Lus10022837 [exp] 267 / 8e-84 AT5G62440 86 / 4e-19 Protein of unknown function (DUF3223) (.1) Lus10002053 [exp] 244 / 3e-75 AT5G62440 98 / 2e-23 Protein of unknown function (DUF3223) (.1) Lus10023594 [exp] 202 / 7e-61 AT5G62440 96 / 1e-23 Protein of unknown function (DUF3223) (.1) Lus10021669 [exp] 92 / 2e-21 AT5G62440 180 / 1e-57 Protein of unknown function (DUF3223) (.1) Lus10035009 [exp] 92 / 5e-21 AT5G62440 179 / 5e-57 Protein of unknown function (DUF3223) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033100 [exp] 85 / 2e-18 AT5G62440 181 / 2e-57 Protein of unknown function (DUF3223) (.1) Potri.013G021800 [exp] 68 / 2e-13 AT5G62440 156 / 9e-49 Protein of unknown function (DUF3223) (.1) Potri.013G022500 [exp] 66 / 3e-12 AT5G62440 148 / 7e-45 Protein of unknown function (DUF3223) (.1) Potri.001G111300 [exp] 49 / 9e-06 AT1G63020 1443 / 0.0 SILENCING MOVEMENT DEFICIENT 2, NUCLEAR RNA POLYMERASE D 1A, nuclear RNA polymerase D1A (.1.2) Potri.014G023400 [exp] 44 / 8e-05 AT3G46630 218 / 1e-72 Protein of unknown function (DUF3223) (.1) Potri.002G125700 [exp] 43 / 0.0001 AT1G45230 210 / 6e-69 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G028300 [exp] 43 / 0.0002 AT1G45230 221 / 2e-73 Protein of unknown function (DUF3223) (.1), Protein of unknown function (DUF3223) (.2) Potri.014G023200 [exp] 41 / 0.001 AT3G46630 194 / 6e-63 Protein of unknown function (DUF3223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11523 [flax] [poplar] DUF3223 Protein of unknown function (DUF3223)
Representative CDS sequence Show only first row Show all	>Lus10024968 pacid=23178986 polypeptide=Lus10024968 locus=Lus10024968.g ID=Lus10024968.BGIv1.0 annot-version=v1.0 ATGAAGCAGCGAGCCCGCGAGGAAATTGGGGAAGCAGCGAGCGGCGGCCATGATGCCGGTAAGAAGCAGAAGCCCGAAAACGACGACGTCGGAAAAGAGG CGGCGGTGGTCCGTTTGGGTACGAAGGAATTCACGAGTTCCCGTCAGATGTTTGAAACTTTCCGATCGTGGATTAGATTCTACTCAGTTCAAAAACCTAT GAATTGCGAAGCTGTGTTACTGGACTTGGTGAAGAAGGGTCATCCCGAGTCCGATAAATTGATTGGTTGTGGGGTGGATTCATTTCGATGCCGAAAGCAA GACATGTGCAACGACTTCCTCTCCTTCTTGATTGTCAGGAAAGACGGTTCCACTGCGGATTTCTGCTACAGGAGGTGTGTGAACAATATCCTTGCGTTGC CTGAGGATTTGAAATATCAAGGTAGTGGTGTTGTCGCTGTTTGTGCATGTCTTGTAGAAGGAGGCTACAAGGGTTTGGAAGTTAAAAGATTAGAAGAGAT AAGTAAACGCTTGGAAAGACTTAATGGCGAAAGAGAAGCCAGGCTAGATGCAGAGGCTGCGAAATTGGTCTTCTTGGGTCAGAGGAAATTCAGGGACTCC CCTCAGATGTATTGTTTTTTTTTCTACTTGCTTAACAGGTTGCCACTTAATGAGACTCTCGTCGGGGAGAATGCACACGAAATGTTACTTGATTTACTGA AGAAGGGTGATCCAGAATCAGAAAACAAGATTGGTTCTTCTGGTGTCGAATCATTTCAAGTTCGAATCCATCCAGGATATGGCGGTATTCTGCGAAGCTT CTACTTTGTTAGAGGAGATGGTTCCATGCAGGATTTCTGCTTCATTAAGTGCGTTGACGGTATCTTTCCAATTTCAGAGGAAGCCAACAAACTATATGTT GGTCCTTGTAGCTGTCATCATGAACAAGACTGGGAAGGTGCTGTCACCTTGGGTTGGTGGAGATTCCCGAATTCCGATCGAATGGTTGAATATTTTACAT CGTTGGTTAAAGTTTGGCCAGATTTTGATCCTCTCAGCGACCAGCTTAACCGAACGGCAGTGTTGGGTTTGCTGAAGAAGGGTGATCCAGAGAAATGGGA GAAGAAGAAGATGGGTTCTGGAGAGGGTATCCAGTCAATCCAAATGCAATCCCACCCTAACCTAGAATTGTCTATGTCAGGACACTGTTTATTCATCATC GTTAAAAGCGATGGTTCGATGGAATCTTTTTGCTCCTGGACATGCATGAACAACCTGCCTTTCCTGCCTGCTGTCAGAAGTTGCGATGGAGGAGGAGCTA ACGTTAGCGCTGGTAGAGGAAGCCGTCGCCGTAATGGTGGCGCTGGTGGAGGAAGCCGTCGCCGTAGTAACGGTTGCGCTGGTGTAGGAAGCCGTCGCCG TAGCTCTCGCCTACGTCCTTTGGTTTGA
AA sequence Show only first row Show all	>Lus10024968 pacid=23178986 polypeptide=Lus10024968 locus=Lus10024968.g ID=Lus10024968.BGIv1.0 annot-version=v1.0 MKQRAREEIGEAASGGHDAGKKQKPENDDVGKEAAVVRLGTKEFTSSRQMFETFRSWIRFYSVQKPMNCEAVLLDLVKKGHPESDKLIGCGVDSFRCRKQ DMCNDFLSFLIVRKDGSTADFCYRRCVNNILALPEDLKYQGSGVVAVCACLVEGGYKGLEVKRLEEISKRLERLNGEREARLDAEAAKLVFLGQRKFRDS PQMYCFFFYLLNRLPLNETLVGENAHEMLLDLLKKGDPESENKIGSSGVESFQVRIHPGYGGILRSFYFVRGDGSMQDFCFIKCVDGIFPISEEANKLYV GPCSCHHEQDWEGAVTLGWWRFPNSDRMVEYFTSLVKVWPDFDPLSDQLNRTAVLGLLKKGDPEKWEKKKMGSGEGIQSIQMQSHPNLELSMSGHCLFII VKSDGSMESFCSWTCMNNLPFLPAVRSCDGGGANVSAGRGSRRRNGGAGGGSRRRSNGCAGVGSRRRSSRLRPLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62440			Protein of unknown function (D...		Lus10024968 [exp]	0	1
					Lus10015620 [exp]	2.6	0.8794
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	7.2	0.8720
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	8.0	0.7903
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10022032 [exp]	11.0	0.7799
AT4G23700		ATCHX17	cation/H+ exchanger 17, cation...		Lus10024717 [exp]	13.0	0.8051
AT3G17220		ATPMEI2	pectin methylesterase inhibito...		Lus10017347 [exp]	13.4	0.8586
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Lus10035572 [exp]	16.9	0.8446
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	17.9	0.8377
AT1G65810			P-loop containing nucleoside t...		Lus10035774 [exp]	18.0	0.7789
AT2G22795			unknown protein		Lus10028240 [exp]	19.6	0.8003

Compare expression of checked genes

Lus10024968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.