Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37380 762 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 508 / 3e-173 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 493 / 7e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02980 483 / 3e-164 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 480 / 8e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 475 / 3e-161 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 469 / 1e-157 MEF22 mitochondrial editing factor 22 (.1) AT2G29760 467 / 2e-156 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 460 / 6e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 461 / 5e-154 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010385 [exp] 1201 / 0 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000110 [exp] 594 / 0 AT4G37380 413 / 9e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 513 / 1e-174 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 508 / 5e-173 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 507 / 7e-173 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 490 / 2e-166 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 488 / 6e-166 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 491 / 1e-165 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 487 / 1e-165 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050200 [exp] 931 / 0 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G239600 [exp] 607 / 0 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 523 / 1e-179 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 511 / 1e-174 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G168800 [exp] 504 / 9e-173 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 492 / 2e-167 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 495 / 2e-166 AT3G22690 582 / 0.0 unknown protein Potri.009G044700 [exp] 489 / 8e-165 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 488 / 1e-164 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 485 / 1e-164 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10024971 pacid=23148446 polypeptide=Lus10024971 locus=Lus10024971.g ID=Lus10024971.BGIv1.0 annot-version=v1.0 ATGTCCTCCGTCGCACTAGTCCCCACAAATTCGCCTGCTAATATCACCAGCCTTCCACCCTCCACCGTCAAGGGTCCAGCTCCGGAAAGACTTGCATCAC TGATTGACAAATGCAAATCCGTGAACCAGCTCATCCAAATCCACGCCTTCCTTTATCGCCACAACTTGAGCGACCACTCAATCCTCTCCTTCAAGCTGCA GAGGTCCTACTCTGGCGCCGGCCGCCTTGACCACTCGCTTTCCATTTTCCGTCAGAACCGGAATCCCGATGTCTTCTTTTTCAGTTCAATTATCCATTCA CATTCCCTCCACAACCTCCACAAAGAGGCGCTCATGCTGTATGTCGAAATGCTGACCCAGAACGTCGCACCCAATGCTTTCACTTTCTCGTCGATTTTGA AGTCTTGCCGTCTTAAACCGGGGAAGGCGTTGCACGGTCAAGCGGTGAAACTTGGTCTGGAATCGGATACGTACGTGAGGACCTGCTTGCTGGACGCTTA TGCCAAAGGAGAAGATATCGAGTCTGCACGCAAGCTGTTTGATTATATGCCTGACAGGAATTTGGTGTCCATGACGGCGATGATTACCTGTTATTCTAAG TGTGGAATGATTAGGGAGGCGAGAGTGTTTTTTAATGGGTTGAAGGAAAAGGATGTTGTGTGTTGGAATGTGATGATTGATGGGTATGCTCAATATGGAT CGCCATACGAGAGTTTGTTACTCTTTAGGCAGATGCTAAGGGCAAAGGTGAGACCAAACGAATCATCCATGGTCTCTGTTCTATCTGCCTGTTCTCAAAT TGGGGCTTTGGAGTCAGGGAGATGGGTTCACTGGTACGCTCAGAATCATGGGATCGATATTAATGTCCGGGTCGCCACTTCGTTGATTGACATGTACAGT AAATGTGGGAGCTTGGAGGAAGCAATGCAGGTTTTCGAGAGGACTACTTACAAGGATGTAGTTGCCTGGAATTCAATGATAGTGGGGTATTCAATGCACG GGTTTAGCAAGGATGCATTGCATTTGTTTGATGAGATGTGCAGAGTCGGGTACAGACCAACGTATATAACTTTCATTGGCGTGCTGAATGCTTGCACTCA TGCCGGTTTGGTTCGCGAAGGACGGGAAGTTTTCTATTCCATGGCAGAAAAATACGGTATTGAGCCAAGGATCGAGCATTACGGGTGCATGGTAAACCTC CTTGGTCGTGCCGGCCATCTAGAAGAAGCTTACGAGCTCGTCAAGAACATGGAAATAGAACAAGACGTTATCTTATGGGGAGCTCTGTTGGGTGCTTGTA GAATTCACGGTAATGTTGCTTTAGGCGAGGAGATAGCCCGGTTTATGATCGACCAGAATCTTGCAAATCCTGGTACATATGTGCTTATGTCCAACATGTA CGCTGAGGCAAACGACTGGGAAGGTGTAGCCGGGGTGAGGAAATTGATGAGAGAAAATGGAGTAGAGAAAGAGCATGGTTGCAGCTCGATAGAAGTGAAG AATAAAGTACACGAGTTCGTTGCTGGGGACTGGAGGCATCCGAAGAGCAGAGATATTCATAGAATGGTAGAAGAAATTAATGACTGGGTTAAGGCACATG GGCATACCCCTCGAACGGAAACTGTACTGCACAATTTAGAGGAAACAGAGAAGGAGCAGTCACTCGGAGTTCACAGTGAAAGACTCGCTATAGCGTTTGG GCTGATCAGTACTAAACCTGGGACTACAATACGTATTGTGAAGAACCTGAGGGTATGTCCAGATTGCCACGCTGTTACTAAGTTGATCTCTAAGATAACT GGACGAAAGATAATTATGAGAGATCGTAATCGTTTCCACCATTTTGAGAATGGATCGTGTTCTTGCAGGGATTATTGGTAA
AA sequence Show only first row Show all	>Lus10024971 pacid=23148446 polypeptide=Lus10024971 locus=Lus10024971.g ID=Lus10024971.BGIv1.0 annot-version=v1.0 MSSVALVPTNSPANITSLPPSTVKGPAPERLASLIDKCKSVNQLIQIHAFLYRHNLSDHSILSFKLQRSYSGAGRLDHSLSIFRQNRNPDVFFFSSIIHS HSLHNLHKEALMLYVEMLTQNVAPNAFTFSSILKSCRLKPGKALHGQAVKLGLESDTYVRTCLLDAYAKGEDIESARKLFDYMPDRNLVSMTAMITCYSK CGMIREARVFFNGLKEKDVVCWNVMIDGYAQYGSPYESLLLFRQMLRAKVRPNESSMVSVLSACSQIGALESGRWVHWYAQNHGIDINVRVATSLIDMYS KCGSLEEAMQVFERTTYKDVVAWNSMIVGYSMHGFSKDALHLFDEMCRVGYRPTYITFIGVLNACTHAGLVREGREVFYSMAEKYGIEPRIEHYGCMVNL LGRAGHLEEAYELVKNMEIEQDVILWGALLGACRIHGNVALGEEIARFMIDQNLANPGTYVLMSNMYAEANDWEGVAGVRKLMRENGVEKEHGCSSIEVK NKVHEFVAGDWRHPKSRDIHRMVEEINDWVKAHGHTPRTETVLHNLEETEKEQSLGVHSERLAIAFGLISTKPGTTIRIVKNLRVCPDCHAVTKLISKIT GRKIIMRDRNRFHHFENGSCSCRDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	0	1
AT5G08720			unknown protein		Lus10025701 [exp]	3.2	0.9221
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	3.5	0.9074
AT3G19170		ATPREP1, ATZNMP	presequence protease 1 (.1.2)		Lus10014039 [exp]	4.2	0.8879
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10036366 [exp]	6.0	0.8984
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10039649 [exp]	6.0	0.8684
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	6.2	0.8742
AT5G08720			unknown protein		Lus10035962 [exp]	7.1	0.9089
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	7.4	0.8893
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	9.2	0.8878
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10019386 [exp]	9.5	0.8850

Compare expression of checked genes

Lus10024971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.