Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67320 640 / 0 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 109 / 5e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G52820 107 / 1e-24 WD-40 repeat family protein / notchless protein, putative (.1) AT4G02730 105 / 1e-24 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 106 / 9e-24 TAF5 TBP-associated factor 5 (.1) AT2G41500 100 / 4e-22 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT2G26060 97 / 2e-21 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G56130 94 / 7e-21 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT2G32700 96 / 3e-20 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT2G43770 91 / 1e-19 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010384 [exp] 729 / 0 AT5G67320 572 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Lus10024447 [exp] 111 / 2e-25 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10007449 [exp] 110 / 4e-25 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10029493 [exp] 109 / 4e-25 AT5G52820 786 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10021059 [exp] 106 / 6e-24 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10039597 [exp] 105 / 1e-23 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Lus10006916 [exp] 100 / 4e-23 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 101 / 3e-22 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 97 / 6e-22 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050100 [exp] 723 / 0 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G144400 [exp] 715 / 0 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G148500 [exp] 112 / 3e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 110 / 1e-25 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.018G020200 [exp] 109 / 6e-25 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 103 / 4e-23 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G212800 [exp] 101 / 4e-23 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G263400 [exp] 103 / 5e-23 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.002G051900 [exp] 97 / 9e-22 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 94 / 2e-20 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0561 [flax] [poplar] LisH PF08513 [flax] [poplar] LisH LisH
Representative CDS sequence Show only first row Show all	>Lus10024972 pacid=23148463 polypeptide=Lus10024972 locus=Lus10024972.g ID=Lus10024972.BGIv1.0 annot-version=v1.0 ATGACGTCAATCACTTCCGTCGAACTGAACTACCTCGTTTTCCGGTATCTTCAAGAGTCAGGTTTCACGCATTCTGCATTTGCTTTAGGTTACGAGGCAG GGATTAATAAATGCACTATAGACGGCAATATGGTTCCTCCTGGTTCTCTTATAACATTTGTGCAAAAGGGACTTCAGTACTTGGAGATGGAAGCAAACTT GAGCAATAGTGATGCTGATGTTGAGGAAGACTTTTCATTGCTGCAACCGTTGGAACTTATCACAAAAGATGTATGTGAGTTGCGGCAGATGATCAAAGAG AGGAAAAAAAGTTTGCAAAAGGAAAGAGATAAGGAGAAAGAGAAAGAGAAGGACAAAGAGAAGGAGAAGGACAAAGAGAAAGAGAAGGTTAAAGAGAAAG AGAAAGAAAAAGAGCAAGAAAGAGACAAGGAGATTGAGAAGGAGCATGAAAGAGAACGTGCCTGCATAAGAGAGAAGGAAAGACAAGAACGGGAAAAAGA GGCCGGAAAGGACAGAGAAAGGATAGAGAGGGAGAAGGAGCGAGAAAAAATACATGGAGACGCAACAGGGAGAGGGACGATTCCTGACCAAGAGGAGAAG GCTATTGTCAAACATGATGAAAATGGAACTTCTGGAGGGGTTGAACCAATGGACATTTGTACTACATCAACATCACAGGCTTGTGAAATTAATAGTTCTG ATGTGATGATTTTAGAAGGCCATACTTCTGAGGTTTGCGCCTGTGCATGGAGTCCTACTGGATCACTTCTTGCATCAGGGTCTGGAGATTCCACTGCACG TATATGGACCATTGCAGAGGGTACGTCTAAATCTGGTAATGGTCCGCTAAGTGTATTGGTGCTGAAGCATGTAAAAGGAAAAACTAATGAGAAGAGTAAA GATGTAACGACGCTTGATTGGAATGGTGAAGGAACGTTACTTGCAACTGGTTCATATGATGGGCAAGCCAGAATATGGAGCACAAACGGTGATCTAAAAA GTACTCTGTCCAAACATAAGGGGCCTATTTTTTCTCTGAAGTGGAACAAGAAGGGAGATTTTCTTCTGACTGGGAGCTGCGACAAAACTGCAATAGTGTG GGATGTAAAAGCAGAGGAATGGCGACAACAGTTTGAGTTCCATGCAGGGCCGATACTTGATGTTGATTGGCGCAACAATGTTTCATTTGCCACAAGTTCC ACGGATAATATGATATATGTTTGCAAAGTTGGTGAGACACGTCCCATCAAGACATTTGCTGGCCATCAGGGGGAGGTTAATTGTGTTAAGTGGGATCCAG CGGGCCAGCTACTGGCATCTTGTTCTGATGACATCAGTGCTAAGTCAGTACTTGAAACTTTAAGAAAAATGATGCAGATATGGAGTATGAAGCAAGAAAA GTATGTTTATGATCTGAGGGAGCACACGAAGGAAATATATACTCTCAGATGGAGCCCTACTGGACCTGGTACTAGCAATCCTAATCAACAATTGGTACTG GCAAGTGCATCATTCGACTCAACGGTGAAGTTGTGGGATGTAGAGGTGGGGAAACTTCTCTGCACTTTGAGCGGACACAGGGATCCTGTATATTCGGTGG CATTCAGCCCCAACGGGGAGTATCTGGCAAGTGGTTCTCTTGACAGATGCATAAACATCTGGTCATTGAAGGATGGAAAGATAGTGAAGAAATACACAGG CAACGGAGGCATCTTTGAAGTTTCTTGGAATAAAGAAGGCGACAAAATAGCTGCCTGTTTTGCCAATAATACCGTATGCGTTTTAGATTTCAGAATGTGA
AA sequence Show only first row Show all	>Lus10024972 pacid=23148463 polypeptide=Lus10024972 locus=Lus10024972.g ID=Lus10024972.BGIv1.0 annot-version=v1.0 MTSITSVELNYLVFRYLQESGFTHSAFALGYEAGINKCTIDGNMVPPGSLITFVQKGLQYLEMEANLSNSDADVEEDFSLLQPLELITKDVCELRQMIKE RKKSLQKERDKEKEKEKDKEKEKDKEKEKVKEKEKEKEQERDKEIEKEHERERACIREKERQEREKEAGKDRERIEREKEREKIHGDATGRGTIPDQEEK AIVKHDENGTSGGVEPMDICTTSTSQACEINSSDVMILEGHTSEVCACAWSPTGSLLASGSGDSTARIWTIAEGTSKSGNGPLSVLVLKHVKGKTNEKSK DVTTLDWNGEGTLLATGSYDGQARIWSTNGDLKSTLSKHKGPIFSLKWNKKGDFLLTGSCDKTAIVWDVKAEEWRQQFEFHAGPILDVDWRNNVSFATSS TDNMIYVCKVGETRPIKTFAGHQGEVNCVKWDPAGQLLASCSDDISAKSVLETLRKMMQIWSMKQEKYVYDLREHTKEIYTLRWSPTGPGTSNPNQQLVL ASASFDSTVKLWDVEVGKLLCTLSGHRDPVYSVAFSPNGEYLASGSLDRCINIWSLKDGKIVKKYTGNGGIFEVSWNKEGDKIAACFANNTVCVLDFRM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	0	1
AT5G43490			unknown protein		Lus10003153 [exp]	1.0	0.8945
					Lus10031351 [exp]	2.4	0.8774
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002252 [exp]	2.8	0.8120
AT5G37930			Protein with RING/U-box and TR...		Lus10028535 [exp]	3.7	0.8151
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	5.5	0.8231
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	6.9	0.8357
AT5G41020	MYB		myb family transcription facto...		Lus10041714 [exp]	7.3	0.8383
AT5G43490			unknown protein		Lus10002352 [exp]	9.7	0.8269
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10043184 [exp]	11.0	0.7921
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10013398 [exp]	12.4	0.7788

Compare expression of checked genes

Lus10024972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.