Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35970 826 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G03270 328 / 5e-105 DNA-binding protein, putative (.1) AT5G47010 211 / 7e-59 ATUPF1, UPF1, LBA1 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) AT4G15570 156 / 2e-40 MAA3 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G08840 146 / 5e-37 EMB2411 embryo defective 2411, DNA replication helicase, putative (.1.2) AT1G05460 137 / 6e-34 SDE3 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G16800 121 / 1e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G52090 118 / 7e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G19120 118 / 8e-28 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G05540 115 / 4e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024527 [exp] 1046 / 0 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10026309 [exp] 335 / 1e-107 AT2G03270 1085 / 0.0 DNA-binding protein, putative (.1) Lus10042360 [exp] 278 / 8e-87 AT2G03270 613 / 0.0 DNA-binding protein, putative (.1) Lus10003024 [exp] 214 / 1e-59 AT5G47010 2045 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10011054 [exp] 214 / 1e-59 AT5G47010 1977 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Lus10010991 [exp] 136 / 1e-33 AT1G08840 1394 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Lus10037303 [exp] 131 / 8e-32 AT1G16800 1190 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035717 [exp] 129 / 2e-31 AT1G16800 1196 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015030 [exp] 129 / 2e-31 AT4G15570 972 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073900 [exp] 874 / 0 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G054600 [exp] 335 / 9e-108 AT2G03270 1058 / 0.0 DNA-binding protein, putative (.1) Potri.001G148100 [exp] 211 / 1e-58 AT5G47010 2008 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.003G086400 [exp] 210 / 2e-58 AT5G47010 2042 / 0.0 LOW-LEVEL BETA-AMYLASE 1, RNA helicase, putative (.1) Potri.017G056700 [exp] 148 / 9e-38 AT4G15570 1058 / 0.0 MAGATAMA 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G180200 [exp] 141 / 3e-35 AT1G08840 1528 / 0.0 embryo defective 2411, DNA replication helicase, putative (.1.2) Potri.008G142960 [exp] 135 / 3e-33 AT1G65810 683 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143000 [exp] 135 / 5e-33 AT1G65810 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G143450 [exp] 132 / 2e-32 AT1G65810 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G155400 [exp] 130 / 8e-32 AT1G05460 1127 / 0.0 SILENCING DEFECTIVE, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024974 pacid=23148434 polypeptide=Lus10024974 locus=Lus10024974.g ID=Lus10024974.BGIv1.0 annot-version=v1.0 ATGCTGCTTCAGAAGAATGGTTTGCGGAAGAAAAACCCTTCAATTGCTATTGCAGCTACGCTGTTTGGTGACGAAGAAGATGTTGCATGGTTAGAGGAAA ACAATGTGGTAGATTGGCAGGGAGTGAATTTGGAGGAATCCAGGAGGATCACAAAGTTTGATGATTCACAGAAAAGAGCAATTGCCTTGGGTTTGAATAG GAAAAGACCAGTACTTCTAATTCAAGGGCCTCCTGGCACTGGGAAGTCAGGTTTGCTTAAGGAAATCATCATGCTCGCTGTTCAACAAGGCGAAAGAGTA CTTTTAACAGCGCCAACAAATGCTGCTGTCGACAATATGGTCGAAAAACTTTCAGATGTTGGATTAAACATTGTCCGATTCGGGAATCCTGCACGTATTT CCTCGACAGTAGCATCAAAGTCGTTAGGAGAGATAGTTAACTGCAAGCTTGCAGCATTTAGAGCAGAGCTTGAGAGGAAGAAGTCTGATCTAAGAAAAGA CTTGCGATTCTGTATGAAAGATGATTCTCTAGCTGCTGGCATACGACAACTTTTGAAACAACTAGGCAGGGCACTGCAAAAAAAGGAAAAGGAGACAATA AAGGAAGTGCTATCAACTTCACAAGTTGTTTTAGCCACCAACACTGGAGCTGCGGATCCATCGATAAGAAAGCTTCCATCATTTGATCTGGTTGTAATAG ATGAGGCAGGGCAGGCAATTGAACCTTCATGTTGGATTCCAATACTGCAGGGTAACCGCTGCATTGTTGCAGGTGACCAGTGCCAGCTTGCTCCGTTAAT TTTATCAAGAAAAGCCCTAGAGGGTGGCCTTGGAGTATCTCTACTGGAACGGGCTGCTTCTCTCCACAAAGGGGTCCTCACAACCAGATTAACCACACAA TACCGTATGAATGATGCGATAGCCAGCTGGGCCTCCAAGGAAATGTATGGTGGATCATTGAAGTCCTCTCCTGTTGTTGCCTCACATCTTCTTGTGGATT CTCCATTTGTTAAGCCAACATGGGTTACTCAATGTCCACTGTTGCTACTTGACACAAGGATGCTGTATGGAAGTTTGTCGGCTGACTGTGAAGAGCATCT GGATCCAGCTGGAACAGGCTCATTTTACAATGAAGGGGAAGCTGATATCGTCGTACAACATGTGCTCTCGTTGATATACGCGGGTGTAAGAGCAGCGGAA ATTGTGGTTCAATCACCTTACGTGGCACAGGTGCAGCTCCTGAGGGAGAGATTGGGTGAACTGCCAGAGTCCGTTGACGTTCAGGTCTCAACCGTCGATA GCTTCCAAGGACGGGAAGCTGATGCAGTAATTATATCAATGGTGAGGTCCAATACACTTGGAGCAGTGGGGTTTTTGGGGGACAACAGGAGAATGAATGT GGCAATAACAAGGGCAAGACAGCACGTAGCAGTGGTGTGTGATAGCTCAACGATATGCCACAACAGCTTCTTGGCAAGGCTGTTGCGGCACATCCGGTAT TTCGGAAGAGTGAAGCATGCTGAGCCTGGTAGCTTTGGTGGCTCTGGACTTGGGATGGATCCAATGTTGCCATCAATTGGTTAA
AA sequence Show only first row Show all	>Lus10024974 pacid=23148434 polypeptide=Lus10024974 locus=Lus10024974.g ID=Lus10024974.BGIv1.0 annot-version=v1.0 MLLQKNGLRKKNPSIAIAATLFGDEEDVAWLEENNVVDWQGVNLEESRRITKFDDSQKRAIALGLNRKRPVLLIQGPPGTGKSGLLKEIIMLAVQQGERV LLTAPTNAAVDNMVEKLSDVGLNIVRFGNPARISSTVASKSLGEIVNCKLAAFRAELERKKSDLRKDLRFCMKDDSLAAGIRQLLKQLGRALQKKEKETI KEVLSTSQVVLATNTGAADPSIRKLPSFDLVVIDEAGQAIEPSCWIPILQGNRCIVAGDQCQLAPLILSRKALEGGLGVSLLERAASLHKGVLTTRLTTQ YRMNDAIASWASKEMYGGSLKSSPVVASHLLVDSPFVKPTWVTQCPLLLLDTRMLYGSLSADCEEHLDPAGTGSFYNEGEADIVVQHVLSLIYAGVRAAE IVVQSPYVAQVQLLRERLGELPESVDVQVSTVDSFQGREADAVIISMVRSNTLGAVGFLGDNRRMNVAITRARQHVAVVCDSSTICHNSFLARLLRHIRY FGRVKHAEPGSFGGSGLGMDPMLPSIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35970			P-loop containing nucleoside t...		Lus10024974 [exp]	0	1
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10035875 [exp]	1.4	0.9591
AT5G35970			P-loop containing nucleoside t...		Lus10024527 [exp]	2.0	0.9315
AT1G52510			alpha/beta-Hydrolases superfam...		Lus10025787 [exp]	2.0	0.9483
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Lus10024353 [exp]	3.6	0.9138
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	5.3	0.9220
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	7.1	0.9244
AT4G39970			Haloacid dehalogenase-like hyd...		Lus10000633 [exp]	7.7	0.9316
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10014094 [exp]	8.5	0.9144
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10018280 [exp]	8.7	0.8964
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	8.9	0.9172

Compare expression of checked genes

Lus10024974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.