Plant FIBer expression Database

Lus10024975 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G35970 526 / 2e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024527
[exp]
802 / 0 AT5G35970 1343 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G073900
[exp]
537 / 0 AT5G35970 1414 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10024975 pacid=23148472 polypeptide=Lus10024975 locus=Lus10024975.g ID=Lus10024975.BGIv1.0 annot-version=v1.0
ATGGAAACGGCTTTCGCGCTCCCTCAGCATCCGCCGCCAGTCTCGCATTCCAGTTTGCTGGACGCCCTCACTCGCCCTCACTTGCTCTTCCTCCGCCACA
AAAAGTACCACAACAACTGCTCTCTCAGATGTATCCAAGTCCACTCTAAGCACCAGCAGCCCCCTCCTGATCCTGCTCCCGCTTCCGCCACCACCACCGG
CAGGAGGAAGTGGAAAGCAAGGAAGAACTTCACAACTCGAGGGAAGACCTTCAAGACTAAAAGTACCGCTCCGCCCGAAGCTGAGGAGAAGGAGGAGGTG
GATGTGAGTATGGAGGCTCTTAATCAGAAAGGAGACCCGCTGGGTCGGAGGGATCTCGGAAAGAGAGTTGTCAAGTGGATATCCCTTGGCATGAAGGCAA
TGGCGTCCGATTTCGCTACCGCAGAGGAGCATGGGGAGTTCTCCGAGCTCAAGCAGAGGATGGGACCCGGTTTGACATTTGTGATGCAGGCCCAGACTTA
CCTCAATGCCTTTCCTATGCCTCTAGGGCTGGAGGCTGTTTGTTTGAAGGCCTGTACCCATTACCCTACACTTTTTGATAATTTCCAGAGAGAATTGCTG
GATGTTCTTCGTGGGATGCAGGAAAAAGGTTCCATTCAGGATTGGCGTCAAACCGAGTCCTGGAAGTTGTTCAAATACCTTGCCAATTCAGCTCAGCATA
GACAAATTGCGAGAAAAATAACGCAACCAAAACGGGTGCAAGGAGCTTTAGGAATGGACTTGGAGAAGGCCGAGGCCATACAAGAGCGAATTGATGATTA
TGTTAAGCGAATGTCAGAATTACTCCTCGTGGAGAGGGATGCTGAAGTGGAGTTTACTCAGGAGGAATTGAATGTTGTTCCCACACCTGACAAAACCTCT
GATTCTAGTGGCCCCATCGAGTTCTTGGTTACTCACGGCCAGGCTCAACAAGAAATCTGTGACACCATCTGCAACTTGTATGCAGTGAGCAGCTCTACAG
GATTAGGAGGAATGAACTTGGTTTTGTTTAGGATTGATGGGAATCATCGGTTACCACCTACAAACCTTACGCCTGGTGATATGGTCTGCGTGAGAACATG
CGATAGCAAGGGCACGGTTGAAACTTCTTGTCTGCAAGGATTTATACATAATCTCGGGGAGGATGGCTGTAGCATAAGTGTGGCCCTGGAGTCTCGTCAT
GGAGATGCCACCTTTTCTAGGTTGTCTGGTAAAAGTGTTCGCATTGATCGTATTCAGGGACTAGCAGATGCTCTCACGTATGAGTCTAATGCATTCTGCT
TTTGGTGCTTGTAA
AA sequence
>Lus10024975 pacid=23148472 polypeptide=Lus10024975 locus=Lus10024975.g ID=Lus10024975.BGIv1.0 annot-version=v1.0
METAFALPQHPPPVSHSSLLDALTRPHLLFLRHKKYHNNCSLRCIQVHSKHQQPPPDPAPASATTTGRRKWKARKNFTTRGKTFKTKSTAPPEAEEKEEV
DVSMEALNQKGDPLGRRDLGKRVVKWISLGMKAMASDFATAEEHGEFSELKQRMGPGLTFVMQAQTYLNAFPMPLGLEAVCLKACTHYPTLFDNFQRELL
DVLRGMQEKGSIQDWRQTESWKLFKYLANSAQHRQIARKITQPKRVQGALGMDLEKAEAIQERIDDYVKRMSELLLVERDAEVEFTQEELNVVPTPDKTS
DSSGPIEFLVTHGQAQQEICDTICNLYAVSSSTGLGGMNLVLFRIDGNHRLPPTNLTPGDMVCVRTCDSKGTVETSCLQGFIHNLGEDGCSISVALESRH
GDATFSRLSGKSVRIDRIQGLADALTYESNAFCFWCL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G35970 P-loop containing nucleoside t... Lus10024975
[exp]
0 1
AT5G35970 P-loop containing nucleoside t... Lus10024527
[exp]
1.4 0.9313
AT3G43600 AtAO3, atAO-2, ... Arabidopsis thaliana aldehyde ... Lus10019386
[exp]
2.8 0.9238
AT5G26570 ATGWD3, OK1, PW... PHOSPHOGLUCAN WATER DIKINASE, ... Lus10037434
[exp]
3.5 0.9063
AT3G11560 LETM1-like protein (.1.2.3.4) Lus10021329
[exp]
3.9 0.8834
AT3G11560 LETM1-like protein (.1.2.3.4) Lus10017005
[exp]
4.9 0.9084
AT4G32140 EamA-like transporter family (... Lus10042422
[exp]
6.5 0.8833
AT5G20380 PHT4;5 phosphate transporter 4;5 (.1) Lus10038110
[exp]
7.9 0.8762
AT2G41220 GLU2 glutamate synthase 2 (.1) Lus10003820
[exp]
9.4 0.8714
AT3G19170 ATPREP1, ATZNMP presequence protease 1 (.1.2) Lus10014039
[exp]
10.8 0.8579
AT1G73990 SPPA1, SPPA signal peptide peptidase (.1) Lus10021721
[exp]
13.4 0.8673

Lus10024975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.