Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64890 457 / 2e-159 Major facilitator superfamily protein (.1) AT1G04570 283 / 9e-90 Major facilitator superfamily protein (.1) AT2G33280 224 / 7e-69 Major facilitator superfamily protein (.1) AT5G54860 109 / 8e-26 Major facilitator superfamily protein (.1) AT2G32040 72 / 2e-13 Major facilitator superfamily protein (.1) AT5G10820 72 / 3e-13 Major facilitator superfamily protein (.1) AT5G25040 59 / 5e-09 Major facilitator superfamily protein (.1.2.3) AT1G79710 55 / 6e-08 Major facilitator superfamily protein (.1) AT5G25050 52 / 7e-07 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024529 [exp] 363 / 3e-123 AT1G64890 355 / 2e-120 Major facilitator superfamily protein (.1) Lus10023708 [exp] 177 / 6e-50 AT1G04570 451 / 3e-154 Major facilitator superfamily protein (.1) Lus10037809 [exp] 107 / 6e-25 AT5G54860 630 / 0.0 Major facilitator superfamily protein (.1) Lus10041620 [exp] 85 / 2e-17 AT1G79710 644 / 0.0 Major facilitator superfamily protein (.1) Lus10026890 [exp] 82 / 2e-16 AT5G10820 558 / 0.0 Major facilitator superfamily protein (.1) Lus10004407 [exp] 76 / 3e-16 AT2G33280 135 / 7e-39 Major facilitator superfamily protein (.1) Lus10006106 [exp] 76 / 2e-14 AT2G32040 721 / 0.0 Major facilitator superfamily protein (.1) Lus10003419 [exp] 74 / 6e-14 AT5G25050 625 / 0.0 Major facilitator superfamily protein (.1) Lus10026893 [exp] 74 / 9e-14 AT5G25050 628 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G076300 [exp] 515 / 0 AT1G64890 493 / 3e-173 Major facilitator superfamily protein (.1) Potri.019G043000 [exp] 514 / 0 AT1G64890 488 / 3e-171 Major facilitator superfamily protein (.1) Potri.008G173600 [exp] 315 / 4e-102 AT1G04570 502 / 6e-174 Major facilitator superfamily protein (.1) Potri.010G063800 [exp] 310 / 5e-100 AT1G04570 523 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137300 [exp] 119 / 4e-29 AT5G54860 633 / 0.0 Major facilitator superfamily protein (.1) Potri.011G137400 [exp] 116 / 6e-28 AT5G54860 609 / 0.0 Major facilitator superfamily protein (.1) Potri.018G017100 [exp] 79 / 2e-15 AT5G25050 580 / 0.0 Major facilitator superfamily protein (.1) Potri.006G266000 [exp] 78 / 3e-15 AT5G25050 579 / 0.0 Major facilitator superfamily protein (.1) Potri.006G265500 [exp] 77 / 4e-15 AT5G10820 620 / 0.0 Major facilitator superfamily protein (.1) Potri.010G085900 [exp] 76 / 1e-14 AT2G32040 650 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF03092 [flax] [poplar] BT1 BT1 family
Representative CDS sequence Show only first row Show all	>Lus10024977 pacid=23148461 polypeptide=Lus10024977 locus=Lus10024977.g ID=Lus10024977.BGIv1.0 annot-version=v1.0 ATGGTTTTGTCATCATCTTCTTCGCCGCCTGGCCACCGGCGTAATCCTATCCGGGGATTACTAGGTCTGGGATACTGGGTCCAAGGATTCAGATGTTTCC CATGGCTTGCAGTGAATTTCTTCCTCAAAGACGGACTCAATCTGGACCCTTCCACCCTCCAACTCCTCCAGAACTCCGCCAATCTCCCCATGGTCGGTAA ACCTCTCTACGGTCTCATCTCCGATATCTTCTATATCTCTGGCCAGCACCGCATCCCTTACGTTGCCCTCGGTGCTTTCTTGCAGGCAATCTCGTGGCTG TCTATCACTCTCCTCTCTCCATCAAGCGTCTCAATGTTGAGGTTATCTGTGTATCTCCTCCTAAGCAACCTTGGAGCATCACTAGCTGAGGTTGCAAATG ATGCTATTGTCGCAGAGGCAGCAGGAAGCCAGTCTGATGGATCTTCTATCAAAAGCTCACAGTCATCTTCAGCTAGTGACCTCCAGTCATTTGTCTCGGT AGCATCCTCTGCTGGAGGTGTCCTTGGCAATCTGCTAGGTGGTATTGGCTTGAGCAAATTCTCTCCTCGAGCTATGTTCCTCGCCTTTGGCATCATTGCT TTTGCGCAATTTCTTATAACCATTTTTGTCAGCGAAAGATCCCTCAACCTCCCGAAAGCTTCACCTAATGCTGGGGTAAGTAAACAGCTCCTACAACTCT CGGTGGCATTGCGCAAACGGGAAATCGCTTACTCAGTCACCTGGTTAGCCGCTTCCTTTGCCATCATCCCAGCACTGACAGGAACCATGTTTTACTACCA AACTCAACAACTAAAAATTGACTCGTCAGTGTTGGGAATGTCGAAAGTGTTTGGCCAGGCTGCAATGCTTATTTGGAGCATTGTTTACAGTCATCGACTG AAGTTTGTCCCTCCAAGGAAATTGATTGCAGCTATTCAGACAACAATGGCGGTGCTAATGATCTCAGATGCCCTTTTTGTCAAGGGATTTTACCGCAATC TGGGGGTGCCGGATTCACTCTACGTGGTGATATTCTCAGGCTTCTTGGAGGTTCTATACTTCTTCAAGCTTCTTCCATTCAACATTGTGATGACACAACA GTGTCCTCCAGGGTGTGAAGGGTCGCTGATGGCGATTGTCGCATCTGCCATAGCCCTTTCATTCATCATTAGTGGCTACTTAGGCATTGGACTCGCATCT TTGATCGGGGTCACAGAAGATGACTTCTCGGGGCTTCCTAGTGGACTTGTGATCCAGGCAATATGCACAGCTGTTCCAATATATTGGTCATCTTGTATTC CAGATGCTAAAAAGGTCACGGGAAAGAAGGAATGA
AA sequence Show only first row Show all	>Lus10024977 pacid=23148461 polypeptide=Lus10024977 locus=Lus10024977.g ID=Lus10024977.BGIv1.0 annot-version=v1.0 MVLSSSSSPPGHRRNPIRGLLGLGYWVQGFRCFPWLAVNFFLKDGLNLDPSTLQLLQNSANLPMVGKPLYGLISDIFYISGQHRIPYVALGAFLQAISWL SITLLSPSSVSMLRLSVYLLLSNLGASLAEVANDAIVAEAAGSQSDGSSIKSSQSSSASDLQSFVSVASSAGGVLGNLLGGIGLSKFSPRAMFLAFGIIA FAQFLITIFVSERSLNLPKASPNAGVSKQLLQLSVALRKREIAYSVTWLAASFAIIPALTGTMFYYQTQQLKIDSSVLGMSKVFGQAAMLIWSIVYSHRL KFVPPRKLIAAIQTTMAVLMISDALFVKGFYRNLGVPDSLYVVIFSGFLEVLYFFKLLPFNIVMTQQCPPGCEGSLMAIVASAIALSFIISGYLGIGLAS LIGVTEDDFSGLPSGLVIQAICTAVPIYWSSCIPDAKKVTGKKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64890			Major facilitator superfamily ...		Lus10024977 [exp]	0	1
AT1G22750			unknown protein		Lus10028718 [exp]	3.5	0.9020
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10037201 [exp]	5.6	0.9097
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	6.9	0.9007
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	9.5	0.8930
AT2G44870			unknown protein		Lus10009575 [exp]	9.8	0.8657
AT2G33855			unknown protein		Lus10013983 [exp]	10.0	0.9006
AT1G34000		OHP2	one-helix protein 2 (.1)		Lus10000462 [exp]	10.9	0.8887
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	15.2	0.8791
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	16.1	0.8731
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	20.2	0.8821

Compare expression of checked genes

Lus10024977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.