Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17510 315 / 2e-107 unknown protein AT3G03460 232 / 3e-75 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024530 [exp] 419 / 2e-150 AT5G17510 356 / 5e-124 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G042800 [exp] 359 / 3e-124 AT5G17510 309 / 2e-102 unknown protein Potri.013G076800 [exp] 352 / 2e-122 AT5G17510 310 / 3e-104 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024979 pacid=23148401 polypeptide=Lus10024979 locus=Lus10024979.g ID=Lus10024979.BGIv1.0 annot-version=v1.0 ATGGAGCTGCAAATGGCATATCAAGATGCGTGGCGAGTCTGCCACCCTGATTTTAAGCGCCCATTCACCTCTCTTGAAGATGCCTGCGAGAGGTTACTTC CTTACCATGTAGTTGCAGACTATGAAGCAGAGGAGGATGACAGAATCCTTGATTCTGATTCAACAGGCACAATGCCATCTCGATCTCAGCAGTGGGATTA CAACATTGCTGCGAAGGTTGCAGAATTTACAGGCACATTTGAGAAACAGGCAATGGCTTTCAACATCATAACTCGCAAACGAGTTATGGGGGAATTTCGT TCCGAAGAGCGGCTGATGATTGAACAGGCACTTCTCCAAGAAGAGAAAAGAATGCTGCTGGAGGCGAAAGCAGAAATGGAAGCAAGGGAGAAAGCCAACC AGGAGGCTCAGATGCGGATGGCAGCTATGGCCCAGGCTGAACAAGCTCGGGCGGAGTCTCATGCACATGCAGAAATGATGGCTCGCGGCCCGATAAGGCC AAATGCTCTTGGGGGATCACAAGGTAGCGTCTCAATGAGTCACGATATGGGAGAGCAAGAACACAGTGTGAACCCTGATGAGATGATGAACGGGTGGGGT AACAACATGCAGCGAGATGACAAGGAGCCATCAGAAGATTTCTTGAATGACGAAGAGAATGAGAATGGAGATACCGCAAGCCAAGGCGATTGGCGAGACG TTGGAGAGTTCGACCTCAATTCTAGATAA
AA sequence Show only first row Show all	>Lus10024979 pacid=23148401 polypeptide=Lus10024979 locus=Lus10024979.g ID=Lus10024979.BGIv1.0 annot-version=v1.0 MELQMAYQDAWRVCHPDFKRPFTSLEDACERLLPYHVVADYEAEEDDRILDSDSTGTMPSRSQQWDYNIAAKVAEFTGTFEKQAMAFNIITRKRVMGEFR SEERLMIEQALLQEEKRMLLEAKAEMEAREKANQEAQMRMAAMAQAEQARAESHAHAEMMARGPIRPNALGGSQGSVSMSHDMGEQEHSVNPDEMMNGWG NNMQRDDKEPSEDFLNDEENENGDTASQGDWRDVGEFDLNSR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17510			unknown protein		Lus10024979 [exp]	0	1
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10001670 [exp]	1.0	0.8551
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032561 [exp]	5.3	0.7883
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10040716 [exp]	5.5	0.7733
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10016451 [exp]	10.5	0.7597
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020723 [exp]	14.7	0.7224
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Lus10028164 [exp]	14.9	0.6895
AT5G25170			PPPDE putative thiol peptidase...		Lus10005341 [exp]	15.8	0.7326
AT1G27435			unknown protein		Lus10012558 [exp]	17.0	0.6987
AT3G61880		CYP78A9	cytochrome p450 78a9 (.1.2)		Lus10017334 [exp]	19.0	0.7187
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10028815 [exp]	22.6	0.7553

Compare expression of checked genes

Lus10024979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.