Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33040 130 / 1e-39 Thioredoxin superfamily protein (.1) AT5G11930 100 / 2e-27 Thioredoxin superfamily protein (.1) AT1G28480 67 / 7e-15 roxy19, GRX480 Thioredoxin superfamily protein (.1) AT4G15680 64 / 4e-14 Thioredoxin superfamily protein (.1) AT4G15690 62 / 3e-13 Thioredoxin superfamily protein (.1) AT4G15660 61 / 7e-13 Thioredoxin superfamily protein (.1) AT4G15700 61 / 1e-12 Thioredoxin superfamily protein (.1) AT4G15670 60 / 2e-12 Thioredoxin superfamily protein (.1) AT5G18600 57 / 2e-11 Thioredoxin superfamily protein (.1) AT3G02000 54 / 1e-09 ROXY1 Thioredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013519 [exp] 135 / 6e-42 AT4G33040 115 / 9e-35 Thioredoxin superfamily protein (.1) Lus10041538 [exp] 72 / 1e-16 AT5G14070 134 / 3e-41 Thioredoxin superfamily protein (.1) Lus10035183 [exp] 69 / 2e-15 AT5G14070 148 / 6e-47 Thioredoxin superfamily protein (.1) Lus10013962 [exp] 67 / 8e-15 AT1G28480 135 / 3e-42 Thioredoxin superfamily protein (.1) Lus10029440 [exp] 66 / 1e-14 AT3G62930 144 / 4e-46 Thioredoxin superfamily protein (.1) Lus10005940 [exp] 63 / 3e-13 AT3G62930 137 / 2e-43 Thioredoxin superfamily protein (.1) Lus10002887 [exp] 61 / 1e-12 AT4G15690 149 / 3e-48 Thioredoxin superfamily protein (.1) Lus10011333 [exp] 61 / 2e-12 AT5G14070 151 / 1e-47 Thioredoxin superfamily protein (.1) Lus10033965 [exp] 60 / 2e-12 AT5G18600 148 / 5e-48 Thioredoxin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226900 [exp] 137 / 3e-42 AT4G33040 184 / 8e-61 Thioredoxin superfamily protein (.1) Potri.001G325800 [exp] 70 / 4e-16 AT3G02000 155 / 6e-50 Thioredoxin superfamily protein (.1) Potri.004G049800 [exp] 69 / 3e-15 AT1G28480 94 / 2e-25 Thioredoxin superfamily protein (.1) Potri.003G167000 [exp] 67 / 6e-15 AT5G14070 150 / 9e-48 Thioredoxin superfamily protein (.1) Potri.010G021800 [exp] 66 / 1e-14 AT5G18600 163 / 5e-54 Thioredoxin superfamily protein (.1) Potri.014G134000 [exp] 64 / 8e-14 AT3G62930 158 / 8e-52 Thioredoxin superfamily protein (.1) Potri.001G060600 [exp] 64 / 1e-13 AT5G14070 147 / 1e-46 Thioredoxin superfamily protein (.1) Potri.008G214600 [exp] 63 / 1e-13 AT5G18600 159 / 2e-52 Thioredoxin superfamily protein (.1) Potri.008G214800 [exp] 62 / 3e-13 AT5G18600 157 / 2e-51 Thioredoxin superfamily protein (.1) Potri.002G208700 [exp] 61 / 1e-12 AT3G62930 157 / 1e-51 Thioredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10024982 pacid=23148437 polypeptide=Lus10024982 locus=Lus10024982.g ID=Lus10024982.BGIv1.0 annot-version=v1.0 ATGCAAGGACTAGAGCTCTGTTCAAACGACGACGTCCGCCTCCACCACACCCCTCCTCCTCCGGCTCCCACCACCACCACCACAACAACCTCTGCTTCTC TGTCAATCGACGCCGTTGAATCCGCGGAGGACCGGATCCAGCGGCTGATATCAGAGAATCCGGTCATCATATTCTCCCGATCTTCCTGTTCTATGTGCCA CGTCATGAGGAAGCTTCTCGCCACAATCGGCGTCAATCCTACCGTCATCGAGTTGGAAGATCACGAGATCTCTGCTCTACCTTCACCTCCGCCCAACCAA GATGATTACTCCTCTCCGGTGATTAACCAGCTGTCTCCCTCTGTTTTCATAGGCGGCACATGTGTCGGCGGCCTCGAATCCCTCGTTGGTCTCCACCTCA GCGGACTCCTTGTTCCTAAGCTTGTCCAAGTTGGGGCTCTATGGGTATGA
AA sequence Show only first row Show all	>Lus10024982 pacid=23148437 polypeptide=Lus10024982 locus=Lus10024982.g ID=Lus10024982.BGIv1.0 annot-version=v1.0 MQGLELCSNDDVRLHHTPPPPAPTTTTTTTSASLSIDAVESAEDRIQRLISENPVIIFSRSSCSMCHVMRKLLATIGVNPTVIELEDHEISALPSPPPNQ DDYSSPVINQLSPSVFIGGTCVGGLESLVGLHLSGLLVPKLVQVGALWV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33040			Thioredoxin superfamily protei...		Lus10024982 [exp]	0	1
					Lus10017869 [exp]	2.0	0.9477
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	2.2	0.9519
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	4.9	0.9465
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10017871 [exp]	6.3	0.9160
AT2G04570			GDSL-like Lipase/Acylhydrolase...		Lus10031520 [exp]	6.5	0.9420
AT1G06460		ACD31.2, ACD32....	ALPHA-CRYSTALLIN DOMAIN 31.2, ...		Lus10007366 [exp]	6.9	0.9312
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	7.7	0.9470
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001756 [exp]	9.2	0.8908
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	9.7	0.9446
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10018626 [exp]	10.0	0.9091

Compare expression of checked genes

Lus10024982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.