Plant FIBer expression Database

Lus10024985 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33030 726 / 0 SQD1 sulfoquinovosyldiacylglycerol 1 (.1)
AT1G63180 54 / 8e-08 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1)
AT1G12780 54 / 1e-07 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
AT3G53520 44 / 0.0001 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013513
[exp]
905 / 0 AT4G33030 729 / 0.0 sulfoquinovosyldiacylglycerol 1 (.1)
Lus10032973
[exp]
181 / 2e-55 AT4G33030 176 / 1e-54 sulfoquinovosyldiacylglycerol 1 (.1)
Lus10023074
[exp]
47 / 3e-05 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G228000
[exp]
731 / 0 AT4G33030 751 / 0.0 sulfoquinovosyldiacylglycerol 1 (.1)
Potri.003G123700
[exp]
52 / 7e-07 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF01370 Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence
>Lus10024985 pacid=23148421 polypeptide=Lus10024985 locus=Lus10024985.g ID=Lus10024985.BGIv1.0 annot-version=v1.0
ATGCCGCACTTGCTTTCAACTTCTTGCTCCCTGAAATTGTGCTCCGGCCGCAAATCTCTTCCTCAATTGTTTAGTCAGCTACACGCTTCAGATTATCCTG
GATGTCTCGCATCCAAACCTTCCCGGTATCAGTTTAATGGGCTTGTCTTGCAGCAAAATCCATCACGGAGAAGCTGTGCTGTTCGTGCTGCAAGTCAACA
ACTTCAAACTGGTAAGCCCAGCTCTGGAATCTACCAGGCCGCTGATGGTGGACTTCCCATAGCACAAAGGGTTATGGTAATTGGTGGAGATGGTTACTGT
GGCTGGGCTACTGCTTTGCATCTTTCTAATAAAGATTATGACGTAGCTATTGTTGATAACCTTGTACGCCGCAGCTTTGATCAGCAACTTGGTCTGGACT
CCCTTACCCCTATTGCTTCCATTCACAATCGGATTCGTCGTTGGAAGTCTGTCACTGGAAAGACTATTGATCTGTACATTGGTGACATTTGCGAATTTGG
ATTCTTAGAAGAAGCCTTCAGGTCATTTCAGCCTGATGCTGCTGTCCATTTCGGGGAACAACGTTCTGCTCCTTATTCCATGGTTGATCGCTCTAGAGCT
ATCTATACTCAGCACAACAATGTGATTGGAACACTAAACGTTCTGTTTGCCATTAAGGAATTCCAAGAGAATTGCCACCTAGTGAAGCTTGGAACAATGG
GGGAGTATGGAACCCCTAACATTGATATTGAGGAAGGTTATATAACAATAACCCATAATGGTCGAACAGATACGTTACCTTATCCTAAGCAAGCTAGTTC
CTTTTACCATCTTAGCAAAGTGCATGACTCACACAACATAGCTTTCACTTGTAAAGCTTGGGGAATTAGAGCTACTGATCTAAATCAAGGAGTCGTTTAT
GGTCTAAGGACAGAAGAGACGGAAATGCATGAAGAGTTGCAAAACAGGCTTGACTATGATTCTGTCTTTGGAACTGCACTGAATCGTTTCTGCGTTCAGG
CTGCTGTAGATCATCCGCTGACGGTCTATGGGAAAGGTGGTCAGACCCGGGGTTACCTGGACATCAGGGATACAGTTCAATGTGTTGAACTAGCGATTGC
AAACCCTGGACGGCCTGGTGAATTCAGAGTGTTTAATCAATTTACAGAGCAGTTCTCAGTGAATGAACTTGCCTCCCTAGTTACCAGCGCTGGGAAGAAG
CTGGGTCTTGATGTGAAGACAAAATCGGTACCAAACCCAAGAGTGGAGGCAGAGGAACATTATTACAATGCTAAGCACACCAAACTGATTGAGTTGGGAC
TTAAGCCACACTTGCTGTCGGACTCACTCCTCGATTCGTTGCTCAACTTTGCGGTGAAGTACAAGGACCGGGTGGACACAAAGCAGATAATGCCTACTGT
TTCATGGAAGGGTATTGGTAGCAGACCTAAAACAGTTACAGCCTAA
AA sequence
>Lus10024985 pacid=23148421 polypeptide=Lus10024985 locus=Lus10024985.g ID=Lus10024985.BGIv1.0 annot-version=v1.0
MPHLLSTSCSLKLCSGRKSLPQLFSQLHASDYPGCLASKPSRYQFNGLVLQQNPSRRSCAVRAASQQLQTGKPSSGIYQAADGGLPIAQRVMVIGGDGYC
GWATALHLSNKDYDVAIVDNLVRRSFDQQLGLDSLTPIASIHNRIRRWKSVTGKTIDLYIGDICEFGFLEEAFRSFQPDAAVHFGEQRSAPYSMVDRSRA
IYTQHNNVIGTLNVLFAIKEFQENCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVY
GLRTEETEMHEELQNRLDYDSVFGTALNRFCVQAAVDHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPGRPGEFRVFNQFTEQFSVNELASLVTSAGKK
LGLDVKTKSVPNPRVEAEEHYYNAKHTKLIELGLKPHLLSDSLLDSLLNFAVKYKDRVDTKQIMPTVSWKGIGSRPKTVTA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G33030 SQD1 sulfoquinovosyldiacylglycerol ... Lus10024985
[exp]
0 1
AT4G01037 AtWTF1 what's this factor?, Ubiquitin... Lus10029446
[exp]
1.4 0.9343
AT3G46610 Pentatricopeptide repeat (PPR-... Lus10014577
[exp]
4.2 0.9331
AT5G46580 pentatricopeptide (PPR) repeat... Lus10000897
[exp]
5.7 0.9316
AT4G01037 AtWTF1 what's this factor?, Ubiquitin... Lus10005945
[exp]
6.9 0.9190
AT4G04640 ATPC1 ATPase, F1 complex, gamma subu... Lus10040068
[exp]
8.4 0.8848
AT2G35410 RNA-binding (RRM/RBD/RNP motif... Lus10035678
[exp]
10.6 0.9249
AT4G38160 PDE191 pigment defective 191, Mitocho... Lus10026571
[exp]
13.4 0.9295
AT1G78630 EMB1473 embryo defective 1473, Ribosom... Lus10005553
[exp]
14.9 0.9328
AT3G12930 Lojap-related protein (.1) Lus10002544
[exp]
15.1 0.9170
AT3G23020 Tetratricopeptide repeat (TPR)... Lus10041172
[exp]
15.9 0.8685

Lus10024985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.