Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11900 305 / 9e-107 Translation initiation factor SUI1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013512 [exp] 294 / 2e-102 AT5G11900 261 / 1e-89 Translation initiation factor SUI1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228100 [exp] 309 / 2e-108 AT5G11900 308 / 4e-108 Translation initiation factor SUI1 family protein (.1) Potri.018G052900 [exp] 303 / 3e-106 AT5G11900 289 / 1e-100 Translation initiation factor SUI1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01253 [flax] [poplar] SUI1 Translation initiation factor SUI1
Representative CDS sequence Show only first row Show all	>Lus10024986 pacid=23148400 polypeptide=Lus10024986 locus=Lus10024986.g ID=Lus10024986.BGIv1.0 annot-version=v1.0 ATGGCCGAGAAACCTCAACCCGTGACAGTTTTGTACTGTGGCGTCTGCTCACTTCCACCGGAGTACTGTGAATTTGGACCCGATTTCGAGAAGTGCAAAC CCTGGCTCGTCAAGAACGCCCCGGATGTCTACCCTGATCTTGTTAAAGATGCTGATGGAAATGACGCTGAAAAGGTCTCTGAACGTCTACAATCTATCGG GATCTCCCATGGCTCCGCTGATAAGGCAGCGTCATCTGCTCAATCTGCAGGGCAGACATCAGTAGCTAAACCTGAAGAAGTCAAGCGTCTTCCTGGTGGC AAATTAAAAAAGAAAGATAAGCAAGAAGTTATAATTGAAAAAGTTGTACGCAACAAGCGCAAGTGTATTACCATCATTAAAGGATTGGACCTCTTTGGAA TTAAGCTTAGCGATGCTTCCAAAAAACTTGGAAAGAAGTTTGCTACTGGTGCTTCAGTGGTCAAGGGCCCAACTGAAAAGGAACAAATTGATGTCCAAGG AGACATAGCGTATGACATCGTCGAGTTCATCACCGACACTTGGCCTGATGTGCCTGAAAGAGCTATCTACTTCATAGAAGATGGGAAGAAAGTGCCAGCT GCCTGA
AA sequence Show only first row Show all	>Lus10024986 pacid=23148400 polypeptide=Lus10024986 locus=Lus10024986.g ID=Lus10024986.BGIv1.0 annot-version=v1.0 MAEKPQPVTVLYCGVCSLPPEYCEFGPDFEKCKPWLVKNAPDVYPDLVKDADGNDAEKVSERLQSIGISHGSADKAASSAQSAGQTSVAKPEEVKRLPGG KLKKKDKQEVIIEKVVRNKRKCITIIKGLDLFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIAYDIVEFITDTWPDVPERAIYFIEDGKKVPA A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11900			Translation initiation factor ...		Lus10024986 [exp]	0	1
AT5G46030			unknown protein		Lus10015293 [exp]	2.0	0.8951
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	2.0	0.8821
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	3.9	0.8785
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10014267 [exp]	4.5	0.8520
AT3G27100			unknown protein		Lus10012534 [exp]	5.9	0.8345
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	6.0	0.8300
AT2G39170			unknown protein		Lus10040608 [exp]	7.1	0.8283
AT5G09830			BolA-like family protein (.1)		Lus10020861 [exp]	7.5	0.8703
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	8.1	0.8282
AT1G60430		ARPC3	actin-related protein C3 (.1.2...		Lus10018909 [exp]	10.2	0.8304

Compare expression of checked genes

Lus10024986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.