Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11890 86 / 8e-21 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT1G17620 76 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026428 [exp] 166 / 7e-52 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10037638 [exp] 89 / 8e-22 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 88 / 1e-21 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 88 / 1e-21 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228600 [exp] 129 / 3e-37 AT5G11890 171 / 4e-52 EMBRYO DEFECTIVE 3135, unknown protein Potri.018G052500 [exp] 127 / 8e-37 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.003G039400 [exp] 98 / 2e-25 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 94 / 4e-24 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10024987 pacid=23148464 polypeptide=Lus10024987 locus=Lus10024987.g ID=Lus10024987.BGIv1.0 annot-version=v1.0 ATGTCGGAGAAAGTATTCCCAGCTTCTAAACAACCTGCAACAAACGGCACTACTCTCCCTACTACCAACGGAGGAGCTGCTTCCGCCACTGCAGTCCCCA ATCCAACCAACAAATCCAACCTCTACAACCCAACTTCACGCCTCCCATACCGTCCCCAGCCATACAGCCGACGCCGCCGCACCCGAAGCGGAAGGAGCAT TTGCTGCTCCAATGAACTTGATTCCGAGTCGGTCAATGGGCTCAGATCCGATCTGAAGAAGAAAAATGGTGTGGCGGCGCTCAAGGTTCAGCTGGACACC AAAGTAGTGGTGAAGATGGGAAAATTGAAGACCAAGAAAGTTGGGATTCGGGTGACCTGCGATGACATTAAAGGCGCAATACCGAAAGGTAAGACTCCTA CTATAGCTGTAACCACCAAGTCCAAGTGCAAGGTTGATCTGAGGATCAAGATCTGGAAGGTCACTTTCTGA
AA sequence Show only first row Show all	>Lus10024987 pacid=23148464 polypeptide=Lus10024987 locus=Lus10024987.g ID=Lus10024987.BGIv1.0 annot-version=v1.0 MSEKVFPASKQPATNGTTLPTTNGGAASATAVPNPTNKSNLYNPTSRLPYRPQPYSRRRRTRSGRSICCSNELDSESVNGLRSDLKKKNGVAALKVQLDT KVVVKMGKLKTKKVGIRVTCDDIKGAIPKGKTPTIAVTTKSKCKVDLRIKIWKVTF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Lus10024987 [exp]	0	1
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10032592 [exp]	2.2	0.9725
AT3G15480			Protein of unknown function (D...		Lus10032662 [exp]	2.4	0.9703
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10002299 [exp]	2.6	0.9623
AT4G08810		SUB1	calcium ion binding (.1)		Lus10013761 [exp]	6.2	0.9579
AT5G61340			unknown protein		Lus10021641 [exp]	7.7	0.9672
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10026541 [exp]	10.5	0.9647
AT2G04850			Auxin-responsive family protei...		Lus10001736 [exp]	10.8	0.9648
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10016301 [exp]	11.7	0.9621
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10026656 [exp]	12.4	0.9553
AT2G04850			Auxin-responsive family protei...		Lus10001162 [exp]	13.4	0.9625

Compare expression of checked genes

Lus10024987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.