Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26110 158 / 2e-46 Protein of unknown function (DUF761) (.1) AT5G56980 77 / 7e-16 unknown protein AT4G26130 62 / 6e-11 unknown protein AT5G47920 45 / 1e-05 unknown protein AT4G02170 42 / 0.0002 unknown protein AT5G38700 41 / 0.0004 unknown protein AT4G16790 41 / 0.0007 hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026978 [exp] 309 / 1e-106 AT2G26110 122 / 2e-33 Protein of unknown function (DUF761) (.1) Lus10019517 [exp] 272 / 3e-91 AT2G26110 148 / 5e-43 Protein of unknown function (DUF761) (.1) Lus10025985 [exp] 97 / 1e-23 AT5G56980 82 / 4e-18 unknown protein Lus10014282 [exp] 73 / 1e-14 AT5G56980 84 / 1e-18 unknown protein Lus10011239 [exp] 42 / 0.0004 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1) Lus10004758 [exp] 42 / 0.0007 AT4G16790 72 / 5e-13 hydroxyproline-rich glycoprotein family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G228800 [exp] 223 / 5e-71 AT2G26110 142 / 5e-40 Protein of unknown function (DUF761) (.1) Potri.018G053000 [exp] 222 / 6e-71 AT2G26110 167 / 2e-49 Protein of unknown function (DUF761) (.1) Potri.006G152200 [exp] 130 / 1e-35 AT5G56980 103 / 2e-25 unknown protein Potri.001G171701 [exp] 47 / 5e-07 AT1G15385 53 / 7e-11 unknown protein Potri.003G062300 [exp] 46 / 2e-06 AT1G15385 58 / 8e-13 unknown protein Potri.001G008160 [exp] 45 / 2e-06 AT2G26110 45 / 7e-07 Protein of unknown function (DUF761) (.1) Potri.001G406600 [exp] 45 / 2e-05 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.001G008080 [exp] 40 / 8e-05 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1) Potri.008G167200 [exp] 41 / 0.0004 AT4G14380 87 / 2e-21 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [flax] [poplar] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Lus10024988 pacid=23148427 polypeptide=Lus10024988 locus=Lus10024988.g ID=Lus10024988.BGIv1.0 annot-version=v1.0 ATGTTGGAGGGAACAGTATCAGCTGTACCTTCTTCAATCTGGGCATTGATGAGCAGCTGGTTAACCCCCACCGTTCTTTTCCTTTTCCTCAACATCATGA TTGGCACCATTGCCATTACCTCTTCCCTAGCTTCCCAAAACCCCAACCACCCCAATCAAGAAGATACCAACAATAATAATCATAAACAGCACTACCAGCA GCAGCAGCTTTGGAGATCTCCATCTGTTTTGCAGAAGCTCAAGTCCATCAACTTGTACAGCTACAGATCTCAGGAGCCTCAAATCTCAACTACTGTAGCT TATGACAAGCCTGCCGCCGCCTCTCACGATTTCGACTTCTCGAGCTATGTTCAATCACAGCCGGAAATCGTCCACACACCGCCGCAACTGACCAGATCTC CCTCTGTGTTGCAGAGATTGAAGTCGTTCAATCCCTATAATTACCTCCAGCACACACCCGCAGCAGTGGAACAGCAGCATGAGGAGCAAGACGAACAAGG GCCAGAGATTAAGTTTAGCCGGACACGGAAAGAGGATGAGCAAGAAGCGGTGGAGACACTTGACGAGATATACAGCAAGCTTCAGAGCAGTAACAAAGTT GTAGGGAGGTCGATGTCGGACACTAAGCCAGTAGCTGGTGAGATCCCGAAGAAGCTTCCTAAGAAAATGAAGAAATCGGCCAGCACCAAGTCGGCGTTCG GCCATTTTGAGGAAGAGAAGATAGTAGAGGCTCGACGACCGGCGACAGTAAGGGAACAGAAAAGCAAGAAGATGATAAAGGAAGATGAAGAGGCGGCAGA GGATGAGGGGTGTGTGGATGCCAAGGCTGACGACTTCATAAACAAGTTTAAGCAGCAGCTGAAACTACAGAGGCTTGATTCCATTATCAGGTACAAGGAG ATGATCGGTAGAGGGAGCGCCAAGTAG
AA sequence Show only first row Show all	>Lus10024988 pacid=23148427 polypeptide=Lus10024988 locus=Lus10024988.g ID=Lus10024988.BGIv1.0 annot-version=v1.0 MLEGTVSAVPSSIWALMSSWLTPTVLFLFLNIMIGTIAITSSLASQNPNHPNQEDTNNNNHKQHYQQQQLWRSPSVLQKLKSINLYSYRSQEPQISTTVA YDKPAAASHDFDFSSYVQSQPEIVHTPPQLTRSPSVLQRLKSFNPYNYLQHTPAAVEQQHEEQDEQGPEIKFSRTRKEDEQEAVETLDEIYSKLQSSNKV VGRSMSDTKPVAGEIPKKLPKKMKKSASTKSAFGHFEEEKIVEARRPATVREQKSKKMIKEDEEAAEDEGCVDAKADDFINKFKQQLKLQRLDSIIRYKE MIGRGSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26110			Protein of unknown function (D...		Lus10024988 [exp]	0	1
AT3G44150			unknown protein		Lus10016181 [exp]	3.2	0.9004
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10017425 [exp]	3.5	0.9121
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10017323 [exp]	4.2	0.8615
AT1G61150			LisH and RanBPM domains contai...		Lus10018464 [exp]	4.6	0.8609
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041023 [exp]	4.6	0.8664
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10008448 [exp]	8.7	0.8617
AT1G28120			unknown protein		Lus10030429 [exp]	11.0	0.8402
AT2G19270			unknown protein		Lus10015539 [exp]	11.5	0.8352
AT5G01090			Concanavalin A-like lectin fam...		Lus10027751 [exp]	12.7	0.7562
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10026839 [exp]	12.8	0.8458

Compare expression of checked genes

Lus10024988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.