Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33010 1766 / 0 ATGLDP1 glycine decarboxylase P-protein 1 (.1.2) AT2G26080 1747 / 0 ATGLDP2 glycine decarboxylase P-protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026429 [exp] 1435 / 0 AT4G33010 1394 / 0.0 glycine decarboxylase P-protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G229300 [exp] 1776 / 0 AT4G33010 1791 / 0.0 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053680 [exp] 216 / 2e-63 AT4G33010 289 / 3e-91 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053640 [exp] 210 / 1e-62 AT4G33010 206 / 5e-62 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053720 [exp] 200 / 9e-60 AT4G33010 175 / 7e-52 glycine decarboxylase P-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF02347 [flax] [poplar] GDC-P Glycine cleavage system P-protein
Representative CDS sequence Show only first row Show all	>Lus10024989 pacid=23148402 polypeptide=Lus10024989 locus=Lus10024989.g ID=Lus10024989.BGIv1.0 annot-version=v1.0 ATGGAGCGAGCGAGGCGGCTGGCCAACCGCGCAATTCTGAAGCGGTTACTGAACGAATCCAAGCAAAACAACCACTGCCATAACACCCTCCGTAATGAGC CGCCGGCCGCCGCTTCATCGTCATACTCCTCCTCCCCTGTTTTGTATACTCCTTCACGGTACGTCTCCTCCTCCTCCGCGTCGTCTTCCCCCAGGAATTC TAGGCCAAGCCTATTCCTCGGATCCAGGAATGCTGCGCCTCACAGCTTCGGGACTGGTGTTCGATCCATTTCTGTCGATGCCCTGAAATCCAGCGACACT TTCCCCCGCCGCCATAACTCAGCCACTCCTGAGGAACAGACGAAAATGGCGGAGGTATGTGGGTTCGGTAGTCTTGATGCCTTGATTGATGCTACCGTCC CTAAATCTATTAGACTCGATTCAATGAAGTTCTCCAAGTTCGATGAAGGTCTAACTGAGAGCCAAATGACTCAGCACATGCAATATTTGGCATCGAAGAA CAAGGTTTTCAAGTCGTTTATAGGGATGGGATACTACAACACTCATGTTCCTCCTGTGATTTTGAGGAACATAATGGAGAATCCTGCTTGGTACACACAG TACACCCCGTACCAAGCTGAGATATCTCAGGGAAGATTGGAGTCTCTGCTTAACTACCAGACTGTGATTACGGATCTCACCGGTATGCCTATGTCAAATG CTTCGTTGCTTGATGAAGGGACTGCTGCAGCTGAGGCCATGGCCATGTGCAATAACATTCTTAAGGGGAAGAAGAAGACCTTTATCATCGCCAATAATTG TCATCCACAGACTATTGATATCTGTAAAACTAGAGCTGCTGGTTTTGATATTAACGTGGTTACCGCAGACCTTAAGGACATTGATTACAAGTCTGGAGAT GTTTGTGGTGTTCTGGTTCAGTATCCTGGCACTGAGGGTGAAGTTCTGGATTACGTGGGTTTTGTTAAGAATGCTCATGCGAATTCCGTCAAGGTGGTCA TGGCAACCGACTTGCTGGCATTGACAGTATTGAAGCCTCCTGGTGAATTAGGAGCGGATATTGTTGTTGGTTCTGCGCAGAGGTTTGGTGTCCCGATGGG ATATGGAGGTCCACATGCTGCTTTCTTGGCTACTTCACAGGAGTACAAGAGGCTGATGCCTGGAAGAATTATTGGTGTAAGTGTTGATTCTTCAGGAAAG ACGGCTCTACGTATGGCTATGCAAACTAGGGAGCAGCACATCCGCAGGGACAAGGCTACCAGCAACATCTGTACCGCTCAAGCCTTACTAGCAAACATGG CTGCCATGTATGCAGTCTATCATGGACCTAAAGGTCTTAAAGCGATTGGTGAGAGGGTCCATGGCCTTGCTGGGGCTCTAGCGTTGGGATTAAAGAAACT AGGGCTCCAAGTTCAGGATCTTCCTTTCTTTGACACTGTGAAGATCAAGTGTGCTGATGCACATGCAGTTGCTGATGTAGCTTCTAAAAATGGGATGAAT TTGCGAGTTGTAGATGCAACAACTGTCACCGTATCCTTTGATGAGACAACAACCTTGGAGGACGTAGACAAACTTTTTACTGTTTTTGCTAGCGGTAAAG CTGTCCCCTTCACTGCTGCATCTCTGGCTCCGGAGGTGAATGATGTTATTCCATCTTTGCTGACAAGAGAGAGCCCATATCTCACTCATTCCATCTTTAA CATGTATCATACAGAACATGAGCTTCTCAGATATATACACAAACTGCAGTCGAAGGACCTCTCATTGTGCCACAGCATGATTCCGCTGGGATCGTGTACC ATGAAACTGAATGCAACTACTGAGATGATGCCAGTCACTTGGCCTAGCTTTACTGATATTCATCCATTTGCACCTGTTGAACAGGCTGGTGGTTATCAGG AAATGTTCAACAACTTGGGTGACTTGCTGTGTACAATCACTGGGTTCGATTCCTTCTCTTTGCAACCAAATGCTGGTGCGGCAGGAGAGTATGCTGGACT GATGGTTATTCGTGCTTATCATAAAGCGAGAGGGGATCACCATCGCAATGTCTGCATTATACCTGTTTCAGCACATGGGACAAATCCTGCAAGTGCTGCT ATGTGTGGGATGAAAATTGTGGCTGTTGGCACTGACGCGAAAGGTAACATCAATATAGAAGAGCTGAGGCAGGCTGCCGAAGCAAATAAGGATAACCTGT CTGCACTCATGGTTACATATCCATCAACTCACGGAGTGTATGAAGAAGGTATAGATGAAATCTGTAAAATCATTCATGACAATGGCGGTCAAGTATACAT GGATGGTGCTAACATGAATGCCCAGGTGGGTCTCACTAGCCCAGGTTTCATTGGGGCTGATGTATGCCATCTGAACCTGCACAAAACATTTTGCATTCCA CATGGAGGTGGAGGTCCTGGAATGGGTCCAATTGGCGTGAAGAAGCATTTAGCACCATTTTTACCTTCACATCCGGTGGTATCTACTGGCGGTATACCAG CTCCTGAGAGCTACCAACCGCTCGGCACCATTTCTGCTGCACCTTGGGGGTCTGCGCTTATCTTGCCAATATCTTATACTTACATAGCAATGATGGGATC TCAGGGACTCACAGACGCTTCAAAGATAGCCATCTTAAATGCAAACTATATGGCAAAGCGTCTGGAGAAACACTATCCGGTTCTTTTCCGTGGTGTCAAT GGAACAGTTGCCCATGAGTTTATCGTCGATTTGAGAGGTTTTAAGAATACTGCTGGAATTGAGCCTGAAGATGTTGCAAAACGTTTGATGGATTATGGAT TCCATGGACCTACAATGTCATGGCCAGTCCCAGGGACACTTATGATTGAACCTACTGAGAGTGAGAGCAAGGCTGAATTGGACAGGTTCTGTGATGCACT AATTTCAATTAGGGAAGAAATTACACAGATTGAAAAAGGAAATGCTGATGTCCACAACAATGTCCTTAAGGGAGCTCCGCATCCACCATCTTTGCTAATG GGAGACACATGGACAAAACCATATTCTAGGGAATACGCAGCTTTCCCGGCTTCTTGGCTGCGTGGTGCCAAGTTTTGGCCTACCACAGGACGTGTTGACA ATGTCTACGGAGATCGCAACCTCGTCTGCACACTGCTCTCAGTATCCCAGATGGCTGATGAACAGGCAGCAGCAGCAGCTACTGCGTAG
AA sequence Show only first row Show all	>Lus10024989 pacid=23148402 polypeptide=Lus10024989 locus=Lus10024989.g ID=Lus10024989.BGIv1.0 annot-version=v1.0 MERARRLANRAILKRLLNESKQNNHCHNTLRNEPPAAASSSYSSSPVLYTPSRYVSSSSASSSPRNSRPSLFLGSRNAAPHSFGTGVRSISVDALKSSDT FPRRHNSATPEEQTKMAEVCGFGSLDALIDATVPKSIRLDSMKFSKFDEGLTESQMTQHMQYLASKNKVFKSFIGMGYYNTHVPPVILRNIMENPAWYTQ YTPYQAEISQGRLESLLNYQTVITDLTGMPMSNASLLDEGTAAAEAMAMCNNILKGKKKTFIIANNCHPQTIDICKTRAAGFDINVVTADLKDIDYKSGD VCGVLVQYPGTEGEVLDYVGFVKNAHANSVKVVMATDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRIIGVSVDSSGK TALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPKGLKAIGERVHGLAGALALGLKKLGLQVQDLPFFDTVKIKCADAHAVADVASKNGMN LRVVDATTVTVSFDETTTLEDVDKLFTVFASGKAVPFTAASLAPEVNDVIPSLLTRESPYLTHSIFNMYHTEHELLRYIHKLQSKDLSLCHSMIPLGSCT MKLNATTEMMPVTWPSFTDIHPFAPVEQAGGYQEMFNNLGDLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPASAA MCGMKIVAVGTDAKGNINIEELRQAAEANKDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIP HGGGGPGMGPIGVKKHLAPFLPSHPVVSTGGIPAPESYQPLGTISAAPWGSALILPISYTYIAMMGSQGLTDASKIAILNANYMAKRLEKHYPVLFRGVN GTVAHEFIVDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEITQIEKGNADVHNNVLKGAPHPPSLLM GDTWTKPYSREYAAFPASWLRGAKFWPTTGRVDNVYGDRNLVCTLLSVSQMADEQAAAAATA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10024989 [exp]	0	1
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Lus10038119 [exp]	1.4	0.9110
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Lus10026429 [exp]	2.0	0.8930
AT5G11110		SPSA2, KNS2, AT...	sucrose-phosphate synthase A2,...		Lus10008056 [exp]	2.8	0.8810
AT5G50100			Putative thiol-disulphide oxid...		Lus10042142 [exp]	5.5	0.8769
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10018162 [exp]	8.7	0.8822
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10037825 [exp]	15.1	0.8168
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10020026 [exp]	16.2	0.7625
AT1G16720		HCF173	high chlorophyll fluorescence ...		Lus10034781 [exp]	17.0	0.8531
AT3G49220			Plant invertase/pectin methyle...		Lus10022412 [exp]	17.7	0.8248
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026244 [exp]	18.4	0.8394

Compare expression of checked genes

Lus10024989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.