Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26040 551 / 0 HDA2 histone deacetylase 2 (.1.2) AT5G63110 94 / 9e-21 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT4G38130 80 / 3e-16 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT3G44680 77 / 4e-15 HDA09, HDA9 histone deacetylase 9 (.1) AT5G61070 71 / 6e-13 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT5G61060 70 / 1e-12 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT1G08460 66 / 8e-12 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT4G33470 66 / 2e-11 HDA14, ATHDA14 histone deacetylase 14 (.1) AT5G35600 66 / 2e-11 HDA7 histone deacetylase7 (.1) AT3G18520 53 / 3e-07 HDA15, ATHDA15 histone deacetylase 15 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019486 [exp] 83 / 4e-17 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10034689 [exp] 81 / 5e-16 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10043337 [exp] 79 / 6e-16 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001605 [exp] 80 / 1e-15 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10020570 [exp] 77 / 3e-15 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10006274 [exp] 71 / 4e-13 AT3G44680 756 / 0.0 histone deacetylase 9 (.1) Lus10010889 [exp] 68 / 3e-12 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10017845 [exp] 68 / 6e-12 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10001356 [exp] 65 / 4e-11 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230300 [exp] 608 / 0 AT5G26040 575 / 0.0 histone deacetylase 2 (.1.2) Potri.001G460000 [exp] 82 / 5e-17 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.015G082500 [exp] 82 / 1e-16 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.004G209800 [exp] 80 / 4e-16 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.012G083800 [exp] 80 / 4e-16 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.009G170700 [exp] 78 / 2e-15 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.004G092900 [exp] 78 / 2e-15 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.005G064200 [exp] 67 / 8e-12 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.012G060400 [exp] 59 / 2e-09 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 45 / 7e-05 AT1G08460 552 / 0.0 histone deacetylase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10024990 pacid=23148405 polypeptide=Lus10024990 locus=Lus10024990.g ID=Lus10024990.BGIv1.0 annot-version=v1.0 ATGGTTCTCCGAACGGACCGAGTGCTGAACTCTGAGTCAGCTTGGTTTCTCCGGAAATCAGCTTTGTATACAATCCTCACAGTTGCCGCCATTAAGTTTT CTCATTCACTGTTTACCTACGTCAAGTCTCTCGCTATGTCTTCTTCGTCCTCCTCTACCATGTCTGCTGGTGGCGACACCGAAACTATCCGTCGAAATAG AATTCTCGCGAGCAAGCTTTACTTCGACGTGTCTCCAGCTAAGGTGGCGCTAATATATTCTCCCGCTTATGACATCTCATTTCTGGGCATTGAGAAGTTG CATCCGTTTGATTCTTCTAAATGGGGCCGAGTTTGCCAATTCTTGATAGCTGCTGGTGTTCTGGATAAGAAAAGTATCATTGAGCCACTTGAAGCTTCTA AAGATGACCTGCTTGTGGTTCATTCGGAGGCCTACTTGGACAGTTTAAAGAGCAGCGCCAACGTTTCCATGATAGTTGAGGTTCCTCCCGTTGCCATCTT CCCCAATTGTCTTGTACAGAAGAAAGTTCTTTATCCATTCCGCAAGCAGGTTGGAGGAACTATTTTGGCTGCTAAGCTTGCAAAAGAACGAGGATGTGCT ATCAATGTTGGGGGAGGGTTCCATCACTGTAGCAGTGAAAAAGGAGGTGGATTTTGTGTTTATGCTGACATTTCACTTTGCATTCACTATGCTTTTGCTC GATTGGATATATCCAGGGTGATGATTATTGACCTCGATGCTCATCAAGGGAATGGCCACGAAATGGACTTTTCTACTGAAAAAAGAGTTTATATCCTGGA TATGTACAACCCTGGAATATATCCATTGGATTATGAGGCAAGGAGATTTATTGATCAGAGAGTTGAAGTGGCGAGTGGCACAACAACAGACGAATACTTG AACATATTAGACAACGCGCTTGAGGTTGCTGGTCGAATGTTTGATCCAGAGTTGGTGATCTACAATGCTGGAACTGATATACTTGATGGCGATCCATTGG GGAGATTGAAGATAAGTCCTGCTGGGATTACCAACAGGGATGAGAAGGTTTTCAGGTTTGCTCGTGAAAGGGATGTGCCGCTAGTAATGCTCACATCAGG TGGTTACATGAAGTCCAGCGCAAGAGTTATAGCAGATTCAATTGAAAACCTATCGAAGAAATGCTTAATCAATTTAGTCTGCCATAGGGAATAA
AA sequence Show only first row Show all	>Lus10024990 pacid=23148405 polypeptide=Lus10024990 locus=Lus10024990.g ID=Lus10024990.BGIv1.0 annot-version=v1.0 MVLRTDRVLNSESAWFLRKSALYTILTVAAIKFSHSLFTYVKSLAMSSSSSSTMSAGGDTETIRRNRILASKLYFDVSPAKVALIYSPAYDISFLGIEKL HPFDSSKWGRVCQFLIAAGVLDKKSIIEPLEASKDDLLVVHSEAYLDSLKSSANVSMIVEVPPVAIFPNCLVQKKVLYPFRKQVGGTILAAKLAKERGCA INVGGGFHHCSSEKGGGFCVYADISLCIHYAFARLDISRVMIIDLDAHQGNGHEMDFSTEKRVYILDMYNPGIYPLDYEARRFIDQRVEVASGTTTDEYL NILDNALEVAGRMFDPELVIYNAGTDILDGDPLGRLKISPAGITNRDEKVFRFARERDVPLVMLTSGGYMKSSARVIADSIENLSKKCLINLVCHRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Lus10024990 [exp]	0	1
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Lus10027086 [exp]	2.2	0.8794
AT4G14385			unknown protein		Lus10011821 [exp]	2.4	0.8789
					Lus10013810 [exp]	3.0	0.8783
AT3G15180			ARM repeat superfamily protein...		Lus10038999 [exp]	5.7	0.8445
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	7.2	0.8768
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10013809 [exp]	7.7	0.8460
AT3G26880			Plant self-incompatibility pro...		Lus10025937 [exp]	8.1	0.8589
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10033745 [exp]	9.2	0.8541
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035741 [exp]	10.9	0.8145
AT4G38495			unknown protein		Lus10029400 [exp]	13.9	0.8199

Compare expression of checked genes

Lus10024990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.