Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26200 726 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G54650 135 / 2e-35 Methyltransferase family protein (.1.2) AT2G26810 79 / 4e-16 Putative methyltransferase family protein (.1.2.3) AT4G35987 59 / 2e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G08125 59 / 3e-09 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G73320 46 / 6e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G27410 44 / 0.0005 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G27400 43 / 0.0005 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006576 [exp] 139 / 1e-36 AT1G54650 381 / 1e-133 Methyltransferase family protein (.1.2) Lus10021425 [exp] 60 / 1e-09 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10005515 [exp] 59 / 3e-09 AT1G54650 212 / 4e-67 Methyltransferase family protein (.1.2) Lus10028446 [exp] 53 / 3e-07 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041898 [exp] 54 / 4e-07 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10031894 [exp] 49 / 7e-06 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10026822 [exp] 45 / 0.0002 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3) Lus10015166 [exp] 43 / 0.0005 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031516 [exp] 43 / 0.0007 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G225600 [exp] 809 / 0 AT2G26200 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G044300 [exp] 118 / 3e-29 AT1G54650 376 / 2e-131 Methyltransferase family protein (.1.2) Potri.009G068400 [exp] 78 / 6e-16 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.009G006800 [exp] 59 / 5e-09 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.001G148200 [exp] 52 / 3e-07 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G057000 [exp] 49 / 4e-06 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G153900 [exp] 48 / 9e-06 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08242 [flax] [poplar] Methyltransf_12 Methyltransferase domain CL0063 [flax] [poplar] NADP_Rossmann PF10294 [flax] [poplar] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10024993 pacid=23148408 polypeptide=Lus10024993 locus=Lus10024993.g ID=Lus10024993.BGIv1.0 annot-version=v1.0 ATGGCTTCTAATTCCGGCAACTCTACGGAACAGCACAAACCACCTCAAAAGCTGCAAATATACTCCACCTCTGCCACTGGAGTCACTCCTTTCTGGAGAG ACAAGTACGAAAGGGATGCTAAGAAGTATTGGGATGTATTCTACAAGCGACATGAAGACAGATTTTTTAAAGACCGTCATTACTTGGACAAGGAATGGGA TGACCATATCTGCGGTCCAGGAAGAAAAGTCATTCTTGAGCTTACACATCCTGATGCGCAGATTGGCTGTGGAGCTGGAAACACCATTTTCCCCCTGATT TCTACCTATCCAGAAGTGTTCGTGCATGCATGCGACTTTTCACCGCGCGCTATTGACTTGGTTAAGGCACATAAAGACTACACCAAGACACGTATTAATG CTTTCGTGTGTGATCTCACTGTGGATGATTTGAGCAAGGAAATCTCTCCATCTTCAGTTGATGTTGTCACAATGATTTTTATACTATCTGCAGTGTCCCC TGAAAAGATGCCTCTTGTTCTTCAGAACATCAAGAAAGTTCTAAAGCCAAATGGTCGTGTGCTGCTTCGTGACTATGCAACTGGTGACCTTGCCCAGGAA CGATTCTCTTCAAAGAATCAGAAGATCAGTGAGAACTTTTATGTTAGAGGCGATGGCACTCGTGCTTACTACTTCTCAAATGATTTCTTAAAAAGTTTGT TTGAAGATAGTGGATTCTACGTTGAAGACCTTGATGTCTGTTGCAAACAAGTTGAGAATCGATCACGTGAATTAGTAATGAACAGACGTTGGATCCAGGC TGTATTCCAGCTTTCAGATCTTTCTAAGACCTCTAGCGAAGAAGTTTCAACCAACAAAGACAGCAGTAGCTTAGAAAATAGCCACTCTCCTGCGAAGGAA GGTACTTCACATGAGGAAGTCGACATATCTGAAGGATTAGCTGCCGAAATGTTTGGAATGTTACCTTCCAACTATGATGAGGTTGTGGATGCAGTAGAAT TGCTACAAGTCGATGCTAGATTTGTCTATATGCAGCTATATCTCCTTGTGATTGAGGTGAAAGTTGGAGGGAAGAATTTGAAAATAAACTTACTCTCAAA GGAATACCAGCACACCTGCAGATCAACTGGCTTGATGTTGTGGGAGTCTGCTCGTTTAATGTCTTCCGTTCTTGCTGGGAACCCATCTATTGTAGCAGGG AAAAGGGTGTTGGAGCTGGGAAGTGGGTGTGCAGGAATATGCTCTATGGCTGCCGTTGAGGCAGCTGATCTCGTAGTCGCGACGGATGGAGATACGAAAG CACTCAATCTGTTGACGCAGAATGTTGTCTCCAACCTTAGTGCACCATACGTTTCGAAGCTAGTTACAAAGCTGCTGGAGTGGGGAAATAGAGACCACAT AGAAGCCATCAAGGAACTCAATGCTGGAGGCTTTGAGGTCATTATAGGAACAGATGTGACTTATGTTTCTCAAGCTATCTTGTCACTGTTTTCAACTGCA AAGCAATTAATTGCAACTAGAAGAGATGGAGAAGACCAGGAACCTGCCCTCATCCTCTGTCACGTTATACGGCGAGTTGATGAACCGTCCATACTATCTG CTGCATCTCAATTCGGATTTTATCTGGTGGATAAATGGAGAGGAGATTCACCAAATGAATCGCAAAGCATTGTCGGTTCGTGGTTTCTGAAGAATGGTTG TGTGGATTATATTCCATCTACGGCACTGAACATCATGTACTTCCAGTCTGGAGGAGGGAACAAACAGTGA
AA sequence Show only first row Show all	>Lus10024993 pacid=23148408 polypeptide=Lus10024993 locus=Lus10024993.g ID=Lus10024993.BGIv1.0 annot-version=v1.0 MASNSGNSTEQHKPPQKLQIYSTSATGVTPFWRDKYERDAKKYWDVFYKRHEDRFFKDRHYLDKEWDDHICGPGRKVILELTHPDAQIGCGAGNTIFPLI STYPEVFVHACDFSPRAIDLVKAHKDYTKTRINAFVCDLTVDDLSKEISPSSVDVVTMIFILSAVSPEKMPLVLQNIKKVLKPNGRVLLRDYATGDLAQE RFSSKNQKISENFYVRGDGTRAYYFSNDFLKSLFEDSGFYVEDLDVCCKQVENRSRELVMNRRWIQAVFQLSDLSKTSSEEVSTNKDSSSLENSHSPAKE GTSHEEVDISEGLAAEMFGMLPSNYDEVVDAVELLQVDARFVYMQLYLLVIEVKVGGKNLKINLLSKEYQHTCRSTGLMLWESARLMSSVLAGNPSIVAG KRVLELGSGCAGICSMAAVEAADLVVATDGDTKALNLLTQNVVSNLSAPYVSKLVTKLLEWGNRDHIEAIKELNAGGFEVIIGTDVTYVSQAILSLFSTA KQLIATRRDGEDQEPALILCHVIRRVDEPSILSAASQFGFYLVDKWRGDSPNESQSIVGSWFLKNGCVDYIPSTALNIMYFQSGGGNKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26200			S-adenosyl-L-methionine-depend...		Lus10024993 [exp]	0	1
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Lus10030622 [exp]	1.0	0.9139
AT2G36070		ATTIM44-2	translocase inner membrane sub...		Lus10024888 [exp]	3.2	0.8695
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10037903 [exp]	3.5	0.8889
AT4G29490			Metallopeptidase M24 family pr...		Lus10032694 [exp]	4.6	0.8744
AT5G17440			LUC7 related protein (.1)		Lus10026846 [exp]	6.5	0.8580
AT2G24640		UBP19	ubiquitin-specific protease 19...		Lus10026918 [exp]	6.7	0.8853
AT3G51270			protein serine/threonine kinas...		Lus10017941 [exp]	7.1	0.8784
AT1G77030			hydrolases, acting on acid anh...		Lus10000777 [exp]	7.7	0.8644
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	8.5	0.8529
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	9.2	0.8802

Compare expression of checked genes

Lus10024993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.