Plant FIBer expression Database

Lus10024994 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11980 837 / 0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026437
[exp]
1003 / 0 AT5G11980 894 / 0.0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G225500
[exp]
868 / 0 AT5G11980 890 / 0.0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF04124 Dor1 Dor1-like family
Representative CDS sequence
>Lus10024994 pacid=23148419 polypeptide=Lus10024994 locus=Lus10024994.g ID=Lus10024994.BGIv1.0 annot-version=v1.0
ATGGGAGCTGAAAATGGAAGCGAATCGTCGGGTTTGGCGACACCTCTTCCTCTGGCCACCGCCTCTCAGCAGCCTTACGTATCTGAGCTTCTATCCTTCA
CTCTCGATCGACTTCACAAAGAACCAGAGCTACTAAGGGTTGATGCCGAGCGAATAGAGAGGCAAATGCAGGAGGTAGCGGTGGGGAATTACCGCGCCTT
CATTGCTGCTGCTGATGCTTTAAATGCGATTAGAGAAGAAGTGTCTTACATTGATAAGCATCTTGAATCACTGATATCTGAGATCCCTAAGCTAACATCT
GGTTGCACTGAGTTCATTGAATCAGCAAAAGTGATTCTGGAGAAGCGGAAGATGAACCAAACATTGCTCACGAACCATAGTACATTGCTCGATTTGCTTG
AAATTCCACAGCTCATGGACACGTGTGTGAGAAATGGTAATTATGATGAAGCTCTTGACTTAGAAGCATACGTTGGAAAACTTTCAACCATGCATCCCAA
ATTACCTGTCATCCAGGCTCTGGCAGCAGAAGTTAGGCAGACCACTCGGTCTCTTTTGGCTCAGCTTCTCCAGAAACTTCGGTCTAATATTCAGTTACCA
GAGTGCCTCCGTATTATTGGCTATCTGCGGCGAATAGGAGTATTTAGTGACTATGAAATGCGTTTACAGTTTTTGAGATGTCGAGAGGCATGGCTTACAG
GAATTCTTGAAGATATGGATCAGAGAAATGCGTATGAGGTCTTGAAAGGAATGATAAATTGCCACAGAATGCATCTCTTTGATGTTGTGAATCAATATCG
GGCAATATTTGCAGATGATACGTCAGGTAGTGAAGAGAACTATGATGGTGGCCTTCTTTTCAGTTGGGCCATGCATCAGATAACTTCACATCTTAAAACT
CTGAAAATCATGCTCCCAAAGATAACTGAGGGTGGGCCACTTTCAAATATCCTGGAGCAATGCATGTACTGTGCGATGGGACTCGGAGGGGTTGGGCTAG
ATTTTCGAGGCTTGCTTTCTCCTCTATTCGAAGAGGCAGTTGTCAATTTATTCTCAAAGAACATGGATACAGCAGTTGAAAATTTTCAGTTGGTGTTAGA
TTCACATCGCTGGGTGCCACTACCAGCTGTTGGCTATCCTATTAGTAATATTGGTGAAGAGACCCAGGATGATATAACACCACCATCTTATTTAATGGAG
CATCCACCTCTAGCAGTATTTGTTAATGGTATGCTGGACTTTCACTTCTCAAACCCATTGCTTGCTTGGGGTGGTGTATCCGCTGCAATGAATGAGCTGC
GTCCCTGTGCTCCCTTAAGCCTAAAACATGTGCTTGCTCTACAGTTGATTAAGGGATTGCAAGCTGTTGCAGACTCTCTGTTAAGGTATAATGCGACTAG
AATGCTGAGAGAAAATGAGTCGGGGCTTTTCCTCTCACTTTGCAGAGCATTCATAGAGGTGGCTTATCCACATTGCGCGACATGTTTTGGGCGGTGTTAT
CCAGGAGGGGCTGCTTTTATTATGGATTCAAACAACTTACTCGATGGCCTGAATCGGCTATTGGTGACTGCTCCCTCCAGGGAGCTCCCAAAGACAGTCG
TCGTCAACAGTAACACGGAAGAGAAGGGTGTAGCTGAAAATGGAGATGTCCCTGAGAATGGGGCAACTTCAAATGGTGAATCGGACAAGACAAACATACA
GGCGGATGAAAACAAGGCGGTGACAAGTGAGGCGGAGGAGGCAGCTGGTAAAGTGACTTGA
AA sequence
>Lus10024994 pacid=23148419 polypeptide=Lus10024994 locus=Lus10024994.g ID=Lus10024994.BGIv1.0 annot-version=v1.0
MGAENGSESSGLATPLPLATASQQPYVSELLSFTLDRLHKEPELLRVDAERIERQMQEVAVGNYRAFIAAADALNAIREEVSYIDKHLESLISEIPKLTS
GCTEFIESAKVILEKRKMNQTLLTNHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVGKLSTMHPKLPVIQALAAEVRQTTRSLLAQLLQKLRSNIQLP
ECLRIIGYLRRIGVFSDYEMRLQFLRCREAWLTGILEDMDQRNAYEVLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITSHLKT
LKIMLPKITEGGPLSNILEQCMYCAMGLGGVGLDFRGLLSPLFEEAVVNLFSKNMDTAVENFQLVLDSHRWVPLPAVGYPISNIGEETQDDITPPSYLME
HPPLAVFVNGMLDFHFSNPLLAWGGVSAAMNELRPCAPLSLKHVLALQLIKGLQAVADSLLRYNATRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCY
PGGAAFIMDSNNLLDGLNRLLVTAPSRELPKTVVVNSNTEEKGVAENGDVPENGATSNGESDKTNIQADENKAVTSEAEEAAGKVT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11980 conserved oligomeric Golgi com... Lus10024994
[exp]
0 1
AT1G79820 SGB1 SUPPRESSOR OF G PROTEIN BETA1,... Lus10035862
[exp]
3.0 0.9021
AT5G54830 DOMON domain-containing protei... Lus10034323
[exp]
4.5 0.8893
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Lus10013695
[exp]
5.5 0.8857
AT5G15740 RRT1 O-fucosyltransferase family pr... Lus10013503
[exp]
6.5 0.8649
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Lus10005560
[exp]
7.5 0.8854
AT4G00740 QUA3 QUASIMODO 3, S-adenosyl-L-meth... Lus10018848
[exp]
8.7 0.8693
Lus10037878
[exp]
11.2 0.8492
AT1G06230 GTE4 global transcription factor gr... Lus10034067
[exp]
13.0 0.8334
AT3G05420 ACBP4 acyl-CoA binding protein 4 (.1... Lus10029902
[exp]
15.7 0.8656
AT5G58970 ATUCP2 uncoupling protein 2 (.1.2) Lus10040709
[exp]
17.5 0.8590

Lus10024994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.