Plant FIBer expression Database

Lus10024997 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G12010 244 / 1e-79 unknown protein
AT4G29780 209 / 1e-65 unknown protein
AT3G63270 66 / 4e-13 unknown protein
AT3G55350 64 / 2e-12 PIF / Ping-Pong family of plant transposases (.1)
AT1G72270 53 / 9e-09 unknown protein
AT3G19120 52 / 3e-08 PIF / Ping-Pong family of plant transposases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011946
[exp]
267 / 4e-88 AT4G29780 634 / 0.0 unknown protein
Lus10025271
[exp]
54 / 1e-08 AT3G19120 654 / 0.0 PIF / Ping-Pong family of plant transposases (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10024997 pacid=23148462 polypeptide=Lus10024997 locus=Lus10024997.g ID=Lus10024997.BGIv1.0 annot-version=v1.0
ATGCCGGACGATCAGGTGCTGGAGAAGTCTGCCTTGTACCAGAGAGCAAGTGGAGGTCTGCTTAAAGATGTGTGGATTGTTGGGACATCAGGTTACCCTT
TGATGGATTGGGTTCTGGTGCCTTACACGCAGCAGCATTTAACGTGGACACAGCACGCTTTCAACGAGAAAATCGGGGAGATACAGAAGGTAGGGAAAGA
TGCGTTTGCTAGGTTGAAAGGGAGATGGGTTTGCTTACAGAAGAGGACTGAGGTTAAACTTCAAGACTTGCCTGTTGTGTTGGGAGCTTGCTGTGTGTTG
CATAACATATGTGAGATTTGTGATGAAGGAATTCAGACTGACCTTGTGGTTGATATTGTTGATGATGAGATGGTCCCTGAGGTTGCTCTTCTATCTGTAG
CATCCATGAAGGCTAGAGATTCAATTGCTCATAACCTCCTCCATCATTGCCATGCTGGAACTGCCTTCCTCTAA
AA sequence
>Lus10024997 pacid=23148462 polypeptide=Lus10024997 locus=Lus10024997.g ID=Lus10024997.BGIv1.0 annot-version=v1.0
MPDDQVLEKSALYQRASGGLLKDVWIVGTSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQKVGKDAFARLKGRWVCLQKRTEVKLQDLPVVLGACCVL
HNICEICDEGIQTDLVVDIVDDEMVPEVALLSVASMKARDSIAHNLLHHCHAGTAFL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G12010 unknown protein Lus10024997
[exp]
0 1
AT3G61440 ATCYSC1, ARATH;... BETA-SUBSTITUTED ALA SYNTHASE ... Lus10014765
[exp]
3.6 0.8960
AT3G04660 F-box and associated interacti... Lus10007277
[exp]
3.7 0.9173
AT2G24700 B3 REM10 Transcriptional factor B3 fami... Lus10026264
[exp]
11.8 0.8868
AT1G70840 MLP31 MLP-like protein 31 (.1) Lus10020497
[exp]
13.6 0.9185
AT2G16385 unknown protein Lus10017979
[exp]
15.0 0.9099
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Lus10024583
[exp]
15.0 0.8952
AT4G34000 bZIP AtABF3, ABF3, D... DC3 PROMOTER-BINDING FACTOR 5,... Lus10019850
[exp]
25.7 0.9038
AT3G61660 unknown protein Lus10033949
[exp]
29.4 0.8935
AT5G61820 unknown protein Lus10017315
[exp]
31.7 0.9093
AT3G44710 Plant protein of unknown funct... Lus10020562
[exp]
37.2 0.9044

Lus10024997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.