Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33060 311 / 5e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G36130 121 / 8e-32 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G44600 128 / 5e-31 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT1G01940 118 / 5e-31 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G67530 125 / 4e-30 ATPUB49 plant U-box 49 (.1) AT2G38730 89 / 5e-20 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34960 83 / 6e-18 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 83 / 2e-17 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT3G62030 82 / 4e-17 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT4G34870 79 / 1e-16 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026441 [exp] 381 / 3e-126 AT4G33060 555 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10007794 [exp] 129 / 4e-31 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10020573 [exp] 128 / 5e-31 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10006271 [exp] 128 / 6e-31 AT3G44600 1110 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10004731 [exp] 124 / 8e-30 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10009237 [exp] 114 / 4e-29 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 112 / 4e-28 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 110 / 5e-28 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10008662 [exp] 91 / 1e-20 AT2G38730 342 / 2e-121 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G061700 [exp] 310 / 2e-98 AT4G33060 548 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.006G225201 [exp] 130 / 5e-36 AT4G33060 125 / 1e-35 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 124 / 7e-33 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G146400 [exp] 128 / 4e-31 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.002G149700 [exp] 117 / 3e-30 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 113 / 5e-29 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G148900 [exp] 120 / 3e-28 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.001G030000 [exp] 94 / 7e-22 AT2G38730 348 / 5e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G194500 [exp] 92 / 2e-21 AT2G38730 349 / 2e-124 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 86 / 2e-18 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10024999 pacid=23148448 polypeptide=Lus10024999 locus=Lus10024999.g ID=Lus10024999.BGIv1.0 annot-version=v1.0 ATGTCGTCCATCTACGTGCTGGAGCCGCCTACGAAAGGCAAGGTAATCCTAAACACTACCCACGGCCCAATTGATATCGAGCTCTGGCCGAAGGAGGCTC CCAAGGCTGTTCGCAACTTCGTCCAGCTCTGCCTGGAAGGCTACTACGACAACACTATTTTTCACCGCATTATCAAAGGCTTCATCATTCAAGGCGGTGA TCCTACCTCAACTGGGACTGGTGGTGATAGTATATATGGGGGTTCCTTTTCTGACGAATTTCATTCTCGTCTGAGATTTAACCACAGAGGGATAGTTGCT TGTGCTAATGCTGGCTCTCCACATACAAATGGGAGCCAGTTCTTTATGACTTTGGATAAGTCCGATTGGCTTGACCGAAAGAATACAATCTTTGGGAAGG TGACTGGGGATTCTATATTCAATCTCCTTACCATTGGTGAACTTGAAACAGGCAAGGACGATAGACCACTGGACCCCGTCCCAAAGATAAAATCAGTTTT GTGGAATCCTTTTGATGATATAGTTCCAAGGGTAGTGCCTACAACTGTCAATCAATCATCAACTGACGCTGAAAGTGATAAGGATTTGAAAAGGAAACCT GTCAAAACCACATTGCTCAAACTTCAAGTTGCAAAGTGCAAGAGCTGCCTGGAAGAAGCTAAACAAGCATGCTTGAAATTGTTAGCCGAATTCGCCCAAA AAAAGGAGAAGGTTGCTCGTGAGCTAGGTGTAAGAGAGGATGTTCATGTCTCTTTCGTTGAACCACAGGAAGAAGACACCATTTGTGCACGCAGTTCAGA ACCTAAGAAATTAGGCCCCATGGACAGATTTGCTCGGTCCATTTATCTTGCATTATCTTCGGGGGGAGCACTTCAACAACAGAAGATCCACAAGGCTCTT TGGGAGGAGAGAACGCTTCAAGTGCAACAATATGTTGCCAGATGGGTGTATACACATGCTATTCCATTCAATGCCATTGACAATGATGAAAAATTGAACT TGCTTTCATTTGGAGAAGAGGCTGAAGAGGAGGAGAAGGAACTTGCAGCTGTGAAACTAAAGATCAAGAGTAGTCATGATGTGTTGAATGATCCTCGACT CTTAAAGGAGAATCAACAAATAGATGAACCGAATTTTTCAGACGCCAAAGCTACGAGGGAACAACAGTTATCTGTGAGAGAAACTCTGAAATCAAAGAAA GAAGGGTGGCCGAGAACTTCAGGAGCTGAAGTTTCTAATAGTGACGAGGATGACGATAATGAGGCCAACTTTGATGCACGAATGCGTCGCCAATTGCTAA GAAAACGGCAAGAACTTGGAGAGTTTCCATCTAAACAAAATAAAATTGGAAGTTCCAGTGCAGAAAATGGTGAAATTTCTGCTTCAAGGTCAAATGCTGA AAGCTCTGAAGATGAGAAACCAAAGCTGGAGAAGCTGTCACTAAAAAAAAAAGGAACAGGATCAGAAGTAAGAGGTCAACGCATGGCTACTGCAGATACA GAGTTGCAGTTGTATGGTGAAGCTGAGCGAGGAAGACTCTTGCAAAAGCAAAAGAAACGAAGAATCGGAAGACGTGAGGATGAAGTTTTAGCGAAACTGG AGAGGTTCACAAAGACGATATCTGGGAAAGCTATTGTATCGAGTAGTGAGGCTGAAGATGGTCACAAGGAGGATTTGTCAGACTGGAGCTCTGTACAACT AAAATTTGCCTCTGAACGTGGAAAGGATAAGATGTCACGTAAAGATGACCCAGATGACTATGTTGTGCATGATCCTCTATTGGAGAAAGGAAAAGAGAAA TTCAATAGAATGCAAGCAAAGCAGAAGAGACGAGAAAGGGAATGGGCTGGACGGTCTCTAACATAG
AA sequence Show only first row Show all	>Lus10024999 pacid=23148448 polypeptide=Lus10024999 locus=Lus10024999.g ID=Lus10024999.BGIv1.0 annot-version=v1.0 MSSIYVLEPPTKGKVILNTTHGPIDIELWPKEAPKAVRNFVQLCLEGYYDNTIFHRIIKGFIIQGGDPTSTGTGGDSIYGGSFSDEFHSRLRFNHRGIVA CANAGSPHTNGSQFFMTLDKSDWLDRKNTIFGKVTGDSIFNLLTIGELETGKDDRPLDPVPKIKSVLWNPFDDIVPRVVPTTVNQSSTDAESDKDLKRKP VKTTLLKLQVAKCKSCLEEAKQACLKLLAEFAQKKEKVARELGVREDVHVSFVEPQEEDTICARSSEPKKLGPMDRFARSIYLALSSGGALQQQKIHKAL WEERTLQVQQYVARWVYTHAIPFNAIDNDEKLNLLSFGEEAEEEEKELAAVKLKIKSSHDVLNDPRLLKENQQIDEPNFSDAKATREQQLSVRETLKSKK EGWPRTSGAEVSNSDEDDDNEANFDARMRRQLLRKRQELGEFPSKQNKIGSSSAENGEISASRSNAESSEDEKPKLEKLSLKKKGTGSEVRGQRMATADT ELQLYGEAERGRLLQKQKKRRIGRREDEVLAKLERFTKTISGKAIVSSSEAEDGHKEDLSDWSSVQLKFASERGKDKMSRKDDPDDYVVHDPLLEKGKEK FNRMQAKQKRREREWAGRSLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33060			Cyclophilin-like peptidyl-prol...		Lus10024999 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	2.0	0.8866
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10017026 [exp]	4.6	0.8557
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Lus10009488 [exp]	5.3	0.8265
AT2G47620		CHB1, ATSWI3A	SWITCH/sucrose nonfermenting 3...		Lus10032555 [exp]	5.7	0.8453
AT3G20740		FIE1, FIS3, FIE	FERTILIZATION-INDEPENDENT ENDO...		Lus10011165 [exp]	6.5	0.8468
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10042029 [exp]	6.9	0.8689
AT5G02740			Ribosomal protein S24e family ...		Lus10015045 [exp]	7.3	0.8530
AT3G54970			D-aminoacid aminotransferase-l...		Lus10040366 [exp]	8.5	0.8536
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	9.5	0.8576
AT2G37990			ribosome biogenesis regulatory...		Lus10019422 [exp]	10.8	0.8592

Compare expression of checked genes

Lus10024999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.