Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72770 465 / 1e-159 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 446 / 2e-152 HAB2 homology to ABI2 (.1) AT5G57050 439 / 9e-151 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT4G26080 431 / 1e-147 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G07430 247 / 5e-76 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 244 / 6e-76 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 233 / 4e-71 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G51760 231 / 3e-70 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT5G59220 229 / 3e-69 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G24940 160 / 1e-43 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026447 [exp] 970 / 0 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10012962 [exp] 285 / 7e-91 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10040738 [exp] 249 / 2e-76 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10016493 [exp] 246 / 8e-76 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10034965 [exp] 232 / 4e-71 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10004703 [exp] 229 / 3e-69 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 224 / 1e-67 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10019017 [exp] 195 / 7e-57 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 180 / 1e-52 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224600 [exp] 637 / 0 AT1G72770 503 / 1e-174 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.018G060300 [exp] 625 / 0 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.003G044200 [exp] 520 / 0 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.006G164632 [exp] 294 / 1e-94 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 249 / 7e-78 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.015G133900 [exp] 243 / 3e-75 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.012G131800 [exp] 241 / 2e-74 AT5G51760 332 / 3e-111 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) Potri.008G059200 [exp] 241 / 3e-74 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.009G037300 [exp] 239 / 3e-73 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.001G245200 [exp] 231 / 8e-70 AT2G29380 410 / 5e-142 highly ABA-induced PP2C gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10025000 pacid=23148473 polypeptide=Lus10025000 locus=Lus10025000.g ID=Lus10025000.BGIv1.0 annot-version=v1.0 ATGGAGGACATGAACTCCCCGGTGTTGGTGCCATTTAGGGTAGGTAATTTAGCCTGTGATAACGTGACGCATTTGGATATCAAGAGGCAGAAGAAGATAA TGGCAGATGCTGCCAGGCATCCAGATGCTCCTCAAACTGAAGTTTCTGAGGATAACGATTGTCATTGTGACTTGGGTAAGGAAGTTGGTGATGATGGAGT AGTATTGGTTTCACAGCAAGAGGATGGAGTAGAAAGAGAAGCCATGCTGTTGGATATGATATCTGAGGTTGTGAATGATGACGGAACAAGTAGGGAAAGC GAGGAAGATGATTCCTTGTCATTAGAAGGTGATCAAAATCTTGAACTGATTAGCTCTTGTTCCCTCTCGGTGACTAGTGAATCTAGTAGCTTACTTGGAG AAGAATTTTCTTGTTTCGAGGCCATCTCGGATTTTCGAACACCAAGTTTACAAGATGTTGACAGGAGGAGCATCTGTGGTGTTGATAGTTTCACTAGTAC AGAGTTGGAGGAGTCAAGTAATTCAGTATCTGTAGCAGTGAGCCATAGAGATGACGTTACTACAATTTGTTCTGACCCAAACACAACAACTCCTCCGGTT GTAATTGAGTTGGCCCTGGAAAAAGAGGTTCGCGGAGGAACCATTGCACGCAGTGTCTTTGAGGTGGACTATGTGCCTCTCTGGGGTTTTACATCTGTAT GTGGTAGGAGACCAGAGATGGAGGATGCAGTTGCAACTGTGCCTCAGTTCCTGAAAATACCTATCCCAATGCTCATTGGTAATCAGGTATTGGATGGTTT GAGCAAGTGTATAACTCATCAGACTGCTCATTTTTTCGGAGTCTATGATGGTCATGGAGGGTCACAGGTTGCAAACTACTGCCGTGAACGCGTCCATACT GCATTGGTTGAAGAGATTGCAACTGTTGAGAATAGCGTCATCATCGATGGTAGTGTAACAGATGGTTGCCAAGAGCAGTGGAGGAAAGCTTTCACAAATT GTTTTCTGAAAGTTGATGCTGAAATTGGCGGAGCAGAAGGCAGTATTGAACCAGTTGCTCCAGAAACTGTTGGTTCTACTGCTGTTGTTGCTATTATTTG CTCCTCCCACATCATAGTAGCTAACTGTGGGGATTCAAGAGCTGTTCTATGCCGCGGGAAAGAACCTTTGGCGTTGTCTGTGGATCATAAACCGAATAGA GAAGATGAATATGCAAGGATAGAAGCAGCCGGAGGCAAGGTTATACAATGGAATGGGCATCGTGTCTTTGGTGTTCTTGCGATGTCGAGGTCCATTGGTG ATAGATATCTGAAACCATGGATAATTCCAGAGCCAGAAGTGATGTTCATTCCACGAGCAAAAGAAGATGAATGCCTGATTCTGGCAAGTGACGGTTTGTG GGATGTGATGTCGAATGAGGAGGCATGCGATCTTGCTCGAAGAAGAATACTGGTGTGGCACAAGAAGAACGGGAGTGCAGGACTTAATCCTCCTCCTCCG ACGTTGCCTGTTAAAGGGGAGGGGATTGACGCAGCGTCCCAGGCAGCAGCAGAGTACCTGTCAAACCGTGCCCTTCAGAAAGGGAGCAAGGATAACATCA CAGTCATCGTGGTGGACCTGAAACCACAAAGGAAGTTCAAGACAAAAACATGA
AA sequence Show only first row Show all	>Lus10025000 pacid=23148473 polypeptide=Lus10025000 locus=Lus10025000.g ID=Lus10025000.BGIv1.0 annot-version=v1.0 MEDMNSPVLVPFRVGNLACDNVTHLDIKRQKKIMADAARHPDAPQTEVSEDNDCHCDLGKEVGDDGVVLVSQQEDGVEREAMLLDMISEVVNDDGTSRES EEDDSLSLEGDQNLELISSCSLSVTSESSSLLGEEFSCFEAISDFRTPSLQDVDRRSICGVDSFTSTELEESSNSVSVAVSHRDDVTTICSDPNTTTPPV VIELALEKEVRGGTIARSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPQFLKIPIPMLIGNQVLDGLSKCITHQTAHFFGVYDGHGGSQVANYCRERVHT ALVEEIATVENSVIIDGSVTDGCQEQWRKAFTNCFLKVDAEIGGAEGSIEPVAPETVGSTAVVAIICSSHIIVANCGDSRAVLCRGKEPLALSVDHKPNR EDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFIPRAKEDECLILASDGLWDVMSNEEACDLARRRILVWHKKNGSAGLNPPPP TLPVKGEGIDAASQAAAEYLSNRALQKGSKDNITVIVVDLKPQRKFKTKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10025000 [exp]	0	1
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	11.2	0.6038
AT1G11390			Protein kinase superfamily pro...		Lus10002591 [exp]	11.8	0.6257
AT1G01860		PFC1	PALEFACE 1, Ribosomal RNA aden...		Lus10009319 [exp]	35.4	0.5576
AT1G19835			Plant protein of unknown funct...		Lus10034510 [exp]	36.8	0.5937
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	50.3	0.5623
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10007217 [exp]	83.7	0.5482
AT4G38960	CO		B-box type zinc finger family ...		Lus10031087 [exp]	102.0	0.4962
AT4G14490	FHA		SMAD/FHA domain-containing pro...		Lus10031083 [exp]	102.7	0.4894
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10018943 [exp]	117.0	0.5085
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10028297 [exp]	144.3	0.5076

Compare expression of checked genes

Lus10025000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.