Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33090 1356 / 0 ATAPM1, APM1 aminopeptidase M1 (.1) AT1G63770 100 / 4e-21 Peptidase M1 family protein (.1.2.3.4.5) AT5G13520 81 / 1e-15 peptidase M1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026448 [exp] 1722 / 0 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1) Lus10025002 [exp] 1260 / 0 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1) Lus10026449 [exp] 166 / 2e-47 AT4G33090 147 / 1e-41 aminopeptidase M1 (.1) Lus10024641 [exp] 100 / 5e-21 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Lus10040361 [exp] 70 / 5e-12 AT5G13520 729 / 0.0 peptidase M1 family protein (.1) Lus10023479 [exp] 54 / 4e-07 AT5G13520 551 / 0.0 peptidase M1 family protein (.1) Lus10036010 [exp] 50 / 1e-05 AT1G73960 1466 / 0.0 TBP-associated factor 2 (.1.2) Lus10016716 [exp] 49 / 3e-05 AT1G73960 1469 / 0.0 TBP-associated factor 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224500 [exp] 1424 / 0 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1) Potri.017G039200 [exp] 1069 / 0 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1) Potri.001G101975 [exp] 110 / 1e-24 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.003G129500 [exp] 109 / 3e-24 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G102051 [exp] 105 / 5e-24 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.008G045900 [exp] 91 / 2e-18 AT5G13520 965 / 0.0 peptidase M1 family protein (.1) Potri.010G215700 [exp] 85 / 1e-16 AT5G13520 926 / 0.0 peptidase M1 family protein (.1) Potri.015G050800 [exp] 54 / 5e-07 AT1G73960 1552 / 0.0 TBP-associated factor 2 (.1.2) Potri.001G199000 [exp] 49 / 5e-07 AT4G33090 49 / 7e-08 aminopeptidase M1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01433 [flax] [poplar] Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence Show only first row Show all	>Lus10025001 pacid=23148417 polypeptide=Lus10025001 locus=Lus10025001.g ID=Lus10025001.BGIv1.0 annot-version=v1.0 ATGGATCAATTCAAAGGCCAACCTCGCCTCCCAAAGTTCGCCGTTCCCAAACGCTATGACATCCTTCTCAAACCCGACCTCTGCGACTGCAAATTTTCCG GCTCCATCGCCGTCAACCTTGACATCGTATCTGATACCAAGTTCATCGTTCTTAATGCTGCCGACCTCGTCATCGCCTCCAGCTCCGTCTCCTTCACTGG AAAAACTTCTTCTAAGCATTTCAATTGCGGTATAGCAAGATTGCAGAGCAGCAATCGTTTCTGCAAATCGATCTGGCAATTGCTGCAGGTTTTGAAGGCG GTTACAGTCGAATTAATAGAAGCGGATGAGATACTGGTGCTGGAGTTTCCTGATGCACTTCCTCATGGCGTCGGTGTCCTCGCTATGGACTTTGAAGGAG TTTTGAATGATAAAATGAAGGGATTCTATAAAAGTACCTACGAGTTTAATGGCGAGAAAAAGAACATGGCAGTTACGCAGTTCGAGCCTGCAGATGCGAG GAGATGTTTCCCTTGTTGGGATGAACCTGCATGCAAGGCGTCATTTAAGATTACATTGGTTGTTCCCTCTGAGCTGGTCGCTCTTTCCAATATGCCTGTC ATCGAGGAGAAAATAGATGGACCTTTGAAGACAGTTTCGTATCAGGAAACGCCGATAATGTCGACGTACTTGGTTGCAGTTGTCGTGGGACTGTTTGATT ATGTTGAAAATCACACTTCTGATGGGGTTAAAGTTAGGGTATATTGTCAAGTTGGGAAGGCAAATCAAGGGAAATTTGCACTGGATGTTGCTGTGAAGAC GCTTGATCTGTACAAAGAGTACTTTGCCACTCCGTACCCACTTCCCAAGTTGGATATGATTGCAATCCCTGACTTTGCTGCTGGAGCCATGGAGAATTAT GGGTTGGTTACTTATCGGGAGACGGCCTTGCTCTATGATGATAAAAATTCTGCTGCCGCTAACAAGCAAAGGGTTGCTACTGTGGTAGCACATGAGCTCG CACACCAATGGTTTGGTAATCTAGTAACTATGGAATGGTGGACTCATTTGTGGCTAAATGAAGGTTTTGCAACATGGGTGAGTTACCTGGCTGCTGACAG TTTGTTTCCCGAATGGAAAATATGGAATCAATTCCTTGATGAAATTGTTGAAGGTCTAAAGCTAGATGGTCTTGCGGAATCTCATCCCATTGAGGTGGAG ATTAATCATGCGTCTGAAATTGATGAGATATTCGATGCAATAAGCTACAGAAAGGGTGCTTCAGTTATACGGATGCTACAAAGCTTTCTTGGTGCTGAAC CTTTTCAGAGGTCCCTTGCTGCATACATCAAAAGGCATGCTTACTCAAATGCAAAGACAGAGGACTTGTGGGCTGCACTTGAGGAGGGATCTGGAGAACC TGTCACCAAGCTGATGAACTCGTGGACAAGCCAAAAAGGCTATCCGGTTGTAGCCGTCAAAATCAAAGATCAGAAATTGGAATTTGAACAGACACAATTT TTGTCAAGTGGGGCCCATGGAGATGGACAATGGATTGTCCCAATAACTTTATGCTGTGGCTCATATGATGCACGCAAGAACTTCTTACTGCAGGGGAAGT CTGAAATCGTTGATGTCAGAGAATTCCTAGGTTCCAGCATTTTGGATCAAGGAAACATCTGGTTGAAAATTAATGTTGATCAGACTGGTTTCTATAGAGT TAAATATGATGACGCCCTTGCAGCTAGACTTAGACTTGCAATTGGGAAGAAGTGCTTGCATGAAACGGACAGATTTGGAATCTTGGATGATGCATTTGCC CTTTGCATGGCTCGTCACCAGCCGTTGACATCTTTGCTTACTCTGATGGGTGCTTATTGGGAAGAACTGGAGTATACTGTGCTGTCCAACTTGATTACTA TAAGTTACACAGTTGGAAGAGTTGTAGCTGATGCTACCCCTGAATTGCTTAAGGAGCTCAAGCAGACTTTCATTAACCTTTTCCAGTATTCTGCAGAGAA ACTTGGTTGGGATGCTAAACAAGGTGAAGGGCATTTGGAATCAATGTTGAGGGGAGAACTTTTGACTGCTCTTGCTGTGTTTGGACATGATCCAACTATT GATGAAGCAATAAGGCGATTCCGTGCGTTTTTGGATGACCGAAATACACCACTTCTACCTCCTGATGTTAGAAGGGCAGCATACGTATCTGTAATGCAGA GAGTTAGCACTTCAAACAAATGGGGCTATGAATCTCTTCTGAGAGTTTACAGAGAAACTGATTTGAGCCAGGAGAAAACACGCATTTTAGGATCATTGGC ATCATGTCCTGATCCTGATATAGTTTTTGAAGTTCTGAACTTCTTGTTGACACCTGAGGTTCGTAGTCAAGATGTTGTTTACGGACTCTCTGTGAGCAAA GAAGGACGTGAAACAGCCTGGAAATGGCTCAAGGAGAACTGGGAGCACATTACTAACACATGGGGTTCAGGGTTTCTATTGACTCGCTTTGTGTCTGCGA TTGTGTCGCCGTTTGCGTCATTTGATATGGCAAAGGAAGTGGAAGAGTTCTTTAGTAGCTGTGCAAAGCCTTCAATGGCTAGAACACTGAAACAGAGCAT CGAGAGGGTTCACATTAAAGCACAGTGGGTAGAGAGTGTGAGGAATGAGAAACAACTTAAAGAGGTGGTGGAGGAATTAGCATACAGGAAATACTAG
AA sequence Show only first row Show all	>Lus10025001 pacid=23148417 polypeptide=Lus10025001 locus=Lus10025001.g ID=Lus10025001.BGIv1.0 annot-version=v1.0 MDQFKGQPRLPKFAVPKRYDILLKPDLCDCKFSGSIAVNLDIVSDTKFIVLNAADLVIASSSVSFTGKTSSKHFNCGIARLQSSNRFCKSIWQLLQVLKA VTVELIEADEILVLEFPDALPHGVGVLAMDFEGVLNDKMKGFYKSTYEFNGEKKNMAVTQFEPADARRCFPCWDEPACKASFKITLVVPSELVALSNMPV IEEKIDGPLKTVSYQETPIMSTYLVAVVVGLFDYVENHTSDGVKVRVYCQVGKANQGKFALDVAVKTLDLYKEYFATPYPLPKLDMIAIPDFAAGAMENY GLVTYRETALLYDDKNSAAANKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLAADSLFPEWKIWNQFLDEIVEGLKLDGLAESHPIEVE INHASEIDEIFDAISYRKGASVIRMLQSFLGAEPFQRSLAAYIKRHAYSNAKTEDLWAALEEGSGEPVTKLMNSWTSQKGYPVVAVKIKDQKLEFEQTQF LSSGAHGDGQWIVPITLCCGSYDARKNFLLQGKSEIVDVREFLGSSILDQGNIWLKINVDQTGFYRVKYDDALAARLRLAIGKKCLHETDRFGILDDAFA LCMARHQPLTSLLTLMGAYWEELEYTVLSNLITISYTVGRVVADATPELLKELKQTFINLFQYSAEKLGWDAKQGEGHLESMLRGELLTALAVFGHDPTI DEAIRRFRAFLDDRNTPLLPPDVRRAAYVSVMQRVSTSNKWGYESLLRVYRETDLSQEKTRILGSLASCPDPDIVFEVLNFLLTPEVRSQDVVYGLSVSK EGRETAWKWLKENWEHITNTWGSGFLLTRFVSAIVSPFASFDMAKEVEEFFSSCAKPSMARTLKQSIERVHIKAQWVESVRNEKQLKEVVEELAYRKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025001 [exp]	0	1
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	77.4	0.6876
AT1G64300			Protein kinase family protein ...		Lus10032356 [exp]	160.4	0.6608

Compare expression of checked genes

Lus10025001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.