Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33090 1175 / 0 ATAPM1, APM1 aminopeptidase M1 (.1) AT1G63770 97 / 3e-20 Peptidase M1 family protein (.1.2.3.4.5) AT5G13520 92 / 6e-19 peptidase M1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026448 [exp] 1275 / 0 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1) Lus10025001 [exp] 1263 / 0 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1) Lus10026449 [exp] 227 / 1e-69 AT4G33090 147 / 1e-41 aminopeptidase M1 (.1) Lus10024641 [exp] 103 / 3e-22 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Lus10040361 [exp] 73 / 5e-13 AT5G13520 729 / 0.0 peptidase M1 family protein (.1) Lus10023479 [exp] 51 / 3e-06 AT5G13520 551 / 0.0 peptidase M1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224500 [exp] 1261 / 0 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1) Potri.017G039200 [exp] 967 / 0 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1) Potri.001G102051 [exp] 111 / 4e-26 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G101975 [exp] 112 / 2e-25 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.003G129500 [exp] 112 / 4e-25 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.010G215700 [exp] 96 / 3e-20 AT5G13520 926 / 0.0 peptidase M1 family protein (.1) Potri.008G045900 [exp] 95 / 8e-20 AT5G13520 965 / 0.0 peptidase M1 family protein (.1) Potri.015G050800 [exp] 45 / 0.0003 AT1G73960 1552 / 0.0 TBP-associated factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01433 [flax] [poplar] Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence Show only first row Show all	>Lus10025002 pacid=23148410 polypeptide=Lus10025002 locus=Lus10025002.g ID=Lus10025002.BGIv1.0 annot-version=v1.0 ATGGGTTGCCGTGTAGCCCTTGGATCAATCATTTCTCGTTTCCCGCCCTTCCCACTGTTACTTGTCTCCTCCTCAATTCCACCTCCCTCTCTGTCATCAA CAATGGACGGATTCAAAGGGCAGCCTCGCCTTCCTAAGTTCGCCATCCCTAAACATTACTATATCCGCTTGAAACCCGACTTCAACACCTTCAGTTTCGC TGGCTCCCTCGCCATTCATCTCGACATCGTCTCCGCCACCAAGTTCATCGTCCTCAATGCCGCCGACCTCTCCATCACCCCCGGTTCCGTCTCCTTCACC GCCACCAAAGCCACATCTGAGGCGGTGAAGCCTGTGAAATCAGAAGCTGTGGAAGCGGACGAGATACTGATATTCGAGTTCCCCGAGGCTATCTCGGTAG GATTAGGAATTCTCGAGCTGGAATACGAGGGAATTTTGAACGACAAGCTTAAGGGATTCTACAGAAGTGCGTATACAGTTCATGGAGAGAATAAGTACAT GGCGGTTACGCAGTTCGAGCCCGTAGATGCTAGAAGGTGCTTCCCTTGTTGGGATGAACCAGCTCTCAAGGCTACATTCAAGATCACATTAGATGCCCCT TCTGAACTAGTTGCACTTTCTAACATGCCTGTAATGGAGGAGAAAGTAGTAGATGGATCTATAAAAACCATTGTTTATCAAGAAACACCTCTAATGTCCA CGTACTTGGTGGCCGTGGTTATTGGGTTGTTAGACTATGTTGAAGATCATACAGCTGATGGAGTCAAAGTTCGAGTATACAGTCAGGTCGGGAAAAAGGA TCAAGCTAAATTTGCTCTTGATGTAGCTGTAAAGACCCTTGAATTTTACAAACAGTACTTTTCTATTCCGTATCTTCTCCCCAAGCTGGATCTGATTGCA ATCCCCGACTTCTCTGCTGGGGCCATGGAGAATTATGGATTAATTACATTTCGTGAGACAGCCTTGCTCTTTGATGATCAGGGTTCTGCTGCTGCCAACA AGCAAAGGGTTGCTGAGGTAGTGGCACATGAACTAGCACACCAATGGTTTGGCGATCTTGTAACAATGGAGTGGTGGACTCATTTATGGCTAAATGAAGG TTTTGCAACATGGATGAGCCATCTTGCAAATGATAAACTCTTTCCGGAATGGAAAATTTGGACCCAGTTTCTTGTTGAATTTAGCGATGCTCTTAGGTTG GATAGCCTGGAAGAATCACATCCCATTGAGGTTAAGATAAGTCATGCTTCTGAGATCGATGAGATATTTGATGCCATTAGCTATCAAAAGGGTGCCTCCA TTTTGCGGATGCTACAAAACTATCTTGGTGCTGAACCGTTCCAGAGCTCAATTGCTTCATACATCAGAAAATACACTCACTCAAATGCAAAGACGGAAGA CTTGTGGATTTCCCTTGAAGAGGGATCTGGCAAACCAGTAAGCAAGTTAATGCATTTGTGGACAAAGCAAAAGGGGTATCCGATTGTAGCTGTCAATTTA ACGAAAGATAAAAAACTGGAGTTTGAACAGTCACAGTTCTTGTTAAACGGCTCTACTAGTGATAGCCGTTGGATTGTCCCTATATCTTCGTGCTATGGTT CATATGATGCACAGAAGAGTTTCTTGTTGGAATCTAAGCGGGGAACTCTTGATATCAAGGAATTCATCAGTTCCAGTGATTCGGAGAACAACAGCACATG GATAAAAGTAAATATAGGCCAGACTGGCTTCTATAGGGTGAAATATGATGAAGACCTCACAGCTAGACTAAGGAATGGCATAGAGAAGAAATACATTAAT GAAATGGACAGATATGGGATTCTGGATGATGCATTTGCACTTTGTATGTCTCGGCACCAGCCTCTGACCTCTTTGCTAACCCTGATGGGTACTTTCAAGG AGGAACTTGAGTATACTGTTCTTTCTAACATGATTAATATAAGTCAAACTGTTCAAAGGATTGCAGCTGATGCAACCCCTGAACTGCTGAATGACGTTAA CCAATTCTTCACGAATATTTTCTCCAGTTCTGCTGAGAGGCTCGGTTGGGATGCTAAGCAGGGTGAGAACCACCTCGATTCGTTGTTGAGAGGAGAAATT CTGAGGGTTCTGGCTTTGTTTGGACATGGTCCAACATTAGTTGAAGCGAACAGGCGATTCCAAGCATATCTAGATGACAGAAACACTCCACTCCTGCCGC CTGGTATCAGACAGGCAACATATGTTGCCGTTATGCAGAAAGTCAGCACCAAAAACACACAGGGTTATGAATCCCTCCTAAGAGTTTATAGAGAAACAGA TCTCAGCCAGGAGAAAACTCGTGTTCTTGGTGCTCTGGCTTCCTGTCCGGATCCAAAAATAGTTCTTGAAGCTCTAAACTTTTTGTTGACTCCCGAGGTT CGAACACAAGATGCTGCTTTAGGTCTTGCTATTTCTAAGGAAGGACGTGAAACTGCTTGGAACTGGTTCAAGGTTAACTGGGATCACATCTGGCAAACAT GGGGTTCTGGATCTTTAACTAACCGTTTCATCAAAGCAATTGTCTCCCCGTTTGATTCCTTGGAGAAGTGCAAGGAAGTGGAGGACTTCTTTGAGAGCCG CACAACGACTTCAATATCTAGAACAGTGAAGCAAAGCATTGAGCGAGTCAAGATTAATGCCAAGTGGGTTGACAGCATTCGAAAGGAGAAAGCGCTGGCA CAAGTTGTCAAGGGCCTATTAGTAACAAGCTAA
AA sequence Show only first row Show all	>Lus10025002 pacid=23148410 polypeptide=Lus10025002 locus=Lus10025002.g ID=Lus10025002.BGIv1.0 annot-version=v1.0 MGCRVALGSIISRFPPFPLLLVSSSIPPPSLSSTMDGFKGQPRLPKFAIPKHYYIRLKPDFNTFSFAGSLAIHLDIVSATKFIVLNAADLSITPGSVSFT ATKATSEAVKPVKSEAVEADEILIFEFPEAISVGLGILELEYEGILNDKLKGFYRSAYTVHGENKYMAVTQFEPVDARRCFPCWDEPALKATFKITLDAP SELVALSNMPVMEEKVVDGSIKTIVYQETPLMSTYLVAVVIGLLDYVEDHTADGVKVRVYSQVGKKDQAKFALDVAVKTLEFYKQYFSIPYLLPKLDLIA IPDFSAGAMENYGLITFRETALLFDDQGSAAANKQRVAEVVAHELAHQWFGDLVTMEWWTHLWLNEGFATWMSHLANDKLFPEWKIWTQFLVEFSDALRL DSLEESHPIEVKISHASEIDEIFDAISYQKGASILRMLQNYLGAEPFQSSIASYIRKYTHSNAKTEDLWISLEEGSGKPVSKLMHLWTKQKGYPIVAVNL TKDKKLEFEQSQFLLNGSTSDSRWIVPISSCYGSYDAQKSFLLESKRGTLDIKEFISSSDSENNSTWIKVNIGQTGFYRVKYDEDLTARLRNGIEKKYIN EMDRYGILDDAFALCMSRHQPLTSLLTLMGTFKEELEYTVLSNMINISQTVQRIAADATPELLNDVNQFFTNIFSSSAERLGWDAKQGENHLDSLLRGEI LRVLALFGHGPTLVEANRRFQAYLDDRNTPLLPPGIRQATYVAVMQKVSTKNTQGYESLLRVYRETDLSQEKTRVLGALASCPDPKIVLEALNFLLTPEV RTQDAALGLAISKEGRETAWNWFKVNWDHIWQTWGSGSLTNRFIKAIVSPFDSLEKCKEVEDFFESRTTTSISRTVKQSIERVKINAKWVDSIRKEKALA QVVKGLLVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	0	1
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10011231 [exp]	2.0	0.8945
AT3G14360			alpha/beta-Hydrolases superfam...		Lus10003925 [exp]	2.2	0.8976
AT5G14610			DEAD box RNA helicase family p...		Lus10010718 [exp]	3.2	0.8778
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	3.5	0.8713
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	4.2	0.8898
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	5.0	0.8831
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10010436 [exp]	5.2	0.8794
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011403 [exp]	5.7	0.8632
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	5.9	0.8811
AT4G28530	NAC	ANAC074	NAC domain containing protein ...		Lus10033905 [exp]	6.0	0.8812

Compare expression of checked genes

Lus10025002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.