Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20610 96 / 8e-21 unknown protein AT5G26160 79 / 2e-15 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021568 [exp] 114 / 8e-27 AT5G20610 827 / 0.0 unknown protein Lus10017162 [exp] 114 / 8e-27 AT5G20610 762 / 0.0 unknown protein Lus10039886 [exp] 56 / 4e-08 AT1G42550 816 / 0.0 plastid movement impaired1 (.1) Lus10002170 [exp] 47 / 4e-05 AT1G42550 818 / 0.0 plastid movement impaired1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224200 [exp] 140 / 7e-36 AT5G26160 641 / 0.0 unknown protein Potri.006G145500 [exp] 117 / 4e-28 AT5G20610 565 / 0.0 unknown protein Potri.002G006100 [exp] 64 / 1e-10 AT1G42550 796 / 0.0 plastid movement impaired1 (.1) Potri.005G255500 [exp] 47 / 2e-05 AT1G42550 754 / 0.0 plastid movement impaired1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025003 pacid=23148467 polypeptide=Lus10025003 locus=Lus10025003.g ID=Lus10025003.BGIv1.0 annot-version=v1.0 ATGGAGCTTTCCAAGTCAATAAAGTTCCTTTATCAGAAACTTAATGAGGTGAACTTGTACAGTCTAGATAATCTGGATGTTTTATCTCTTTGTCCATGGC GTGGGAAAGCTGATACAAGTCCTAGTAGAGATGATCATGATGAATTCACGGTCGTAGACCAGGGGACAGAAATTCCAGAGAAGGGTGAGTTTGAACTAAA TATAGTAGCTTGTCCTTCAGTGGTTGAGCTCGATGGTTCTGTAATTGAAACTGTTGATATAAATGAAATAATCAGCGATGATGATGAGCCCTGTGCTGCA CAAGAGAAACTCCATTTATGGGATGCTGTATCTGATGGTTATGCAGACAACATGTATGTGGGTAACGAGAAAAGTAGGCCTATTTGTGGATCAACTGTTA AAGACAGAGACGCAGCCTGTCTAGTTTTTGGAGACAATGAGTTTGACTCTCTTTTGTCATGTAATTACTTTATTGAGCATGAAAATTACCCGAAGATGAA ATCAGATTGGGATGGACACGATAGTGTTGAGAAATCACTAAGCTTAGATGAATTCGCTAAGCAGCTTACTTCGGTAATTGAGTCACTTCCGGAGGCAGAC GCATTCAGTGGGATGATGGAAGTTCAAGGGTTCTATCCTGGTGTGTCTAGCCACATCTCTGGATCCAACGGTAGTGGCTATGAGATGGCCTTAGAGTATC TCACACTTGAGGATCTTGTTCCATTAACATTGGATAAAATTGAAGCCTTGACGATTCAGGGTTTAAAGATTCAGTCAGGCATGTCTGAGGACAAGGCACT AGCAAGCATCTATCCTCAATATGCTAGAAGGGAGAAATGGTTGAGTATTGATGCTGAAATTACTAGGGACGGAGATCAAGTTCCTGAGCAAATGAGAGCA GTTCTAGGAGCCCATGGTTCCAAGTCCATTAACATTGTTGATGGGATTTTGGCAAGAGAAGGATCGACAGCAAGGTATGGTGTGTTGGGTAACAATCTTA CTGTAGCATTCATGATGCAACTCAGGGATCCACTTCAAGATTATGAGCCAGTTGGTGCGTCAATGCTTGCTCTATTACAAATAGAGAAAAAGATTCTGCT TTCAGACAATGAAGAGGGTTCCATTGGGTTTAAAATTTATGGTGTCCATGTTTCTGGGTTGAATATAGTGCCAGGAAGGACAGAGCTCTGGGGTACAAAA TACAGTAACAATGTGGAGTTCGCTGGCTGCTTGCTAGTGGCTTGTCCAGCAAGTCCAGTAGATGCTCGGTTTCCATGTTGA
AA sequence Show only first row Show all	>Lus10025003 pacid=23148467 polypeptide=Lus10025003 locus=Lus10025003.g ID=Lus10025003.BGIv1.0 annot-version=v1.0 MELSKSIKFLYQKLNEVNLYSLDNLDVLSLCPWRGKADTSPSRDDHDEFTVVDQGTEIPEKGEFELNIVACPSVVELDGSVIETVDINEIISDDDEPCAA QEKLHLWDAVSDGYADNMYVGNEKSRPICGSTVKDRDAACLVFGDNEFDSLLSCNYFIEHENYPKMKSDWDGHDSVEKSLSLDEFAKQLTSVIESLPEAD AFSGMMEVQGFYPGVSSHISGSNGSGYEMALEYLTLEDLVPLTLDKIEALTIQGLKIQSGMSEDKALASIYPQYARREKWLSIDAEITRDGDQVPEQMRA VLGAHGSKSINIVDGILAREGSTARYGVLGNNLTVAFMMQLRDPLQDYEPVGASMLALLQIEKKILLSDNEEGSIGFKIYGVHVSGLNIVPGRTELWGTK YSNNVEFAGCLLVACPASPVDARFPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20610			unknown protein		Lus10025003 [exp]	0	1
					Lus10008327 [exp]	2.0	1.0000
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	2.8	1.0000
					Lus10010697 [exp]	3.5	1.0000
AT5G12480		CPK7	calmodulin-domain protein kina...		Lus10026300 [exp]	3.9	0.9791
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	4.0	1.0000
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10010341 [exp]	4.2	0.9577
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10000190 [exp]	5.7	0.9502
					Lus10024618 [exp]	5.9	0.9546
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Lus10028217 [exp]	6.5	0.8692
					Lus10008920 [exp]	6.6	0.8988

Compare expression of checked genes

Lus10025003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.