Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26180 541 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G13180 84 / 4e-17 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) AT5G55920 77 / 8e-15 OLI2 OLIGOCELLULA 2, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G06560 67 / 1e-11 NOL1/NOP2/sun family protein (.1) AT4G26600 67 / 1e-11 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G66180 51 / 7e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026452 [exp] 941 / 0 AT5G26180 567 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10016622 [exp] 95 / 2e-20 AT3G13180 759 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10032368 [exp] 76 / 3e-14 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022523 [exp] 74 / 4e-14 AT3G13180 323 / 1e-107 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Lus10023095 [exp] 74 / 2e-13 AT4G26600 736 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10020761 [exp] 59 / 4e-09 AT1G06560 714 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10007337 [exp] 59 / 6e-09 AT1G06560 725 / 0.0 NOL1/NOP2/sun family protein (.1) Lus10020217 [exp] 47 / 5e-05 AT2G22400 975 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041897 [exp] 43 / 0.0009 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G224000 [exp] 654 / 0 AT5G26180 585 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G368500 [exp] 90 / 5e-19 AT3G13180 770 / 0.0 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein (.1) Potri.001G369600 [exp] 78 / 6e-15 AT4G26600 696 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G204900 [exp] 61 / 2e-09 AT1G06560 758 / 0.0 NOL1/NOP2/sun family protein (.1) Potri.007G056800 [exp] 48 / 9e-06 AT5G66180 502 / 2e-178 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.007G096100 [exp] 49 / 1e-05 AT2G22400 1012 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01189 [flax] [poplar] Methyltr_RsmB-F 16S rRNA methyltransferase RsmB/F
Representative CDS sequence Show only first row Show all	>Lus10025004 pacid=23148475 polypeptide=Lus10025004 locus=Lus10025004.g ID=Lus10025004.BGIv1.0 annot-version=v1.0 ATGAAACCCTCCACAACCAAGCCGAAGCAAGCCGGATTCACCGGAAAATCGGAGCACCGTAGATTGAACAATGTTGATCGGTCGGCATACTTTGCCCGGA GAGAAGCCTCCAAGGTCTTACGGAGTGCTCTCCAAGGAGACGCTCGGCGGCGAGCAGCTTTTTCCATCAAATCCCTCGTTTATTGCCCTTCAGTCAGAAA CAAAAAGGCAACTTTCGCTCTGGTCTGCGAAACCCTCAAGCACCTTCGCATTATAAAGGAAGTCTTGGAGTCTGGCAATATACTGAACAGCAAATGGAAG AAACAAGAGGAACTGATGTACATAATGACATATGATATTCTCTTTGGAAAGGAGACTTCATTAACTGGTGGTGATGCGGAGAAGTTTCTCATGCTTAGGA AACAAGCATTGCAGACTGCTCTTGCAAAGCTTCTAGTCACCAAAAAGGTCAAACACGTTGATGACCTGGTTTCTCTTTATCAACCTCCTGATATATTGAA ACCTTGTTATGTCCGTGTAAATACTCTGAAGAGTGATTTTGATTCATCTTTACACCAACTAAGCACGCAATTCAGGGTTGAAAGTGATGCTGTGGTTCCT AACTTGCTGATACTGCCACCGAATACTGATTTGCACAATCATCCTCTTATTTTGGATGGAAGTGTCTTTGTGCAAGGCAGAGCAAGTTCAATGGTTGCTG CAGCTCTGGATCCTCAGCCTGGATGGGAAGTTCTTGATGCATGTGCAGCTCCGGGAAATAAAACTGTTCACCTTGCTGCTCTCATGAACGGAAAGGGAAA AATCCTTGCATGTGAACTGAATAAAGACAGGATTAAACGCCTGGAAGATACTGTTCTACTTTCTGGTGCTAGAATTCATGATGTATGCTTGTCAACCTTG ACAAGGCTTGTAGACATTGAAGTTCTGCATGGTGATTTCCTGAATCTTGACCCGCAAGATCCTTCATTAAACCAGATCCGTGCTATTCTACTAGATCCTT CTTGCTCTGGATCTGGTACTGCCGCTCAAAGATTAGACCATCTACTACCTTCTCATTCTACACGTGAGGTTGATACAGAGAGACTAAACAAGCTTGCAGC TTTTCAGAGGAAAGCTTTGTCCCATGCCTTATCATTTCCGGGTGTTGAGAAAGTAGTATACAGCACGTGCTCAGTGAATCAAACTGAGAACGAAGATGTG GTGAGTGCGGTTCTCCCATTGGCATCGTCACTTGGCTTTGAGCTGTCAACTCCTTTTCCTCAGTGGAAGTGTCGTGGTCTCCCTGTTGTTGAAGGCTCAG AGCATTTGCTGCGTATGGATCCAGCTGAACACAAAGAAGGCTTCTTCATTGGGCTGTTTGTTAAGAAAGGCAGCAGCAGCACTAGAAGATGCGAAGTCAC TTCTAATCCTGAGATGAACTCCGGCGGCAGAAAGAGAAATAGCCGTGGCCGTGCCCCTTTCTTATTGTGGAATAGAATGTGGAGAATGTCTCCTTATGGT TGGCAAAGAAGACGGAAACTGCGACATGAGTTATAA
AA sequence Show only first row Show all	>Lus10025004 pacid=23148475 polypeptide=Lus10025004 locus=Lus10025004.g ID=Lus10025004.BGIv1.0 annot-version=v1.0 MKPSTTKPKQAGFTGKSEHRRLNNVDRSAYFARREASKVLRSALQGDARRRAAFSIKSLVYCPSVRNKKATFALVCETLKHLRIIKEVLESGNILNSKWK KQEELMYIMTYDILFGKETSLTGGDAEKFLMLRKQALQTALAKLLVTKKVKHVDDLVSLYQPPDILKPCYVRVNTLKSDFDSSLHQLSTQFRVESDAVVP NLLILPPNTDLHNHPLILDGSVFVQGRASSMVAAALDPQPGWEVLDACAAPGNKTVHLAALMNGKGKILACELNKDRIKRLEDTVLLSGARIHDVCLSTL TRLVDIEVLHGDFLNLDPQDPSLNQIRAILLDPSCSGSGTAAQRLDHLLPSHSTREVDTERLNKLAAFQRKALSHALSFPGVEKVVYSTCSVNQTENEDV VSAVLPLASSLGFELSTPFPQWKCRGLPVVEGSEHLLRMDPAEHKEGFFIGLFVKKGSSSTRRCEVTSNPEMNSGGRKRNSRGRAPFLLWNRMWRMSPYG WQRRRKLRHEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26180			S-adenosyl-L-methionine-depend...		Lus10025004 [exp]	0	1
AT4G15640			unknown protein		Lus10033970 [exp]	2.8	0.9166
AT2G16370		THY-1	thymidylate synthase 1 (.1)		Lus10040434 [exp]	6.3	0.9054
AT2G14050		MCM9	minichromosome maintenance 9 (...		Lus10023780 [exp]	16.0	0.8829
AT5G08610		PDE340	PIGMENT DEFECTIVE 340, P-loop ...		Lus10012633 [exp]	16.2	0.9041
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	17.7	0.8895
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	17.8	0.9041
AT2G03670		CDC48B	cell division cycle 48B (.1)		Lus10018033 [exp]	19.0	0.8577
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	20.3	0.8880
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	21.0	0.8783
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	21.5	0.8617

Compare expression of checked genes

Lus10025004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.