Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12020 159 / 3e-50 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 144 / 2e-44 AT-HSP17.6A heat shock protein 17.6A (.1) AT1G54050 89 / 6e-23 HSP20-like chaperones superfamily protein (.1) AT1G53540 85 / 4e-21 HSP20-like chaperones superfamily protein (.1) AT4G10250 82 / 6e-20 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G07400 78 / 1e-18 HSP20-like chaperones superfamily protein (.1) AT1G59860 77 / 2e-18 HSP20-like chaperones superfamily protein (.1) AT5G59720 77 / 4e-18 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT3G46230 72 / 4e-16 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT2G29500 68 / 9e-15 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026453 [exp] 262 / 9e-91 AT5G12020 170 / 8e-55 17.6 kDa class II heat shock protein (.1) Lus10000932 [exp] 91 / 7e-23 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 89 / 3e-22 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 87 / 2e-21 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 86 / 3e-21 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10040723 [exp] 73 / 2e-16 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 72 / 2e-16 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 71 / 1e-15 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 71 / 1e-15 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223900 [exp] 201 / 4e-67 AT5G12020 154 / 8e-49 17.6 kDa class II heat shock protein (.1) Potri.003G071100 [exp] 99 / 2e-26 AT1G54050 159 / 2e-50 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 88 / 2e-22 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 88 / 3e-22 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 87 / 4e-22 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 87 / 4e-22 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 87 / 5e-22 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 86 / 2e-21 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 85 / 3e-21 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.013G089200 [exp] 86 / 1e-20 AT4G10250 225 / 1e-74 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10025005 pacid=23148469 polypeptide=Lus10025005 locus=Lus10025005.g ID=Lus10025005.BGIv1.0 annot-version=v1.0 ATGGATCTGCGATTCCTTGGATTCGACTACCCAGTGCTGCAAACTCTGCACCAGATGATGGACAACATGGTCGACGACCACGAGGGGGACAACACCAGCA GCGGAGGCGGCGGGGGAGGAAACAAGACTCCTCGGGCGGCAACCAGGAGATACCTGAGGGATGCCAAGGCAATGGCGGCGACGCCGGCTGATGTAAAGGA GTACCCCAATTCCTACGTGTTCGTGTTAGACATGCCGGGGCTGAAGTCCGCGGACATAAAGGTGCAGGTGGAGGAAGACAACATGCTGACAATAAGCGGC GAGAGGAAGAGGGAAGAGGACAAGGAGGAAGCTGGTGCAAAGTACGTTAGAATGGAGAGGAGGGTCGGGAAGCTGATGAGGAAGTTTGTGCTGCCGGAGA ATGCTAACACCGACGCCATTTCGGCTGTGTGTAAGGATGGGGTGTTGACTGTGACAGTTGAGAAAGTGCCTCCTCCTGAACCCAAGAAGCCCAAGACCAT CCATGTCCAGATTGCCTAA
AA sequence Show only first row Show all	>Lus10025005 pacid=23148469 polypeptide=Lus10025005 locus=Lus10025005.g ID=Lus10025005.BGIv1.0 annot-version=v1.0 MDLRFLGFDYPVLQTLHQMMDNMVDDHEGDNTSSGGGGGGNKTPRAATRRYLRDAKAMAATPADVKEYPNSYVFVLDMPGLKSADIKVQVEEDNMLTISG ERKREEDKEEAGAKYVRMERRVGKLMRKFVLPENANTDAISAVCKDGVLTVTVEKVPPPEPKKPKTIHVQIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12020		HSP17.6II	17.6 kDa class II heat shock p...		Lus10025005 [exp]	0	1
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	1.0	0.9890
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	1.4	0.9882
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	1.7	0.9867
AT3G13130			unknown protein		Lus10038793 [exp]	2.6	0.9645
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10029455 [exp]	4.5	0.9697
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	4.5	0.9737
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Lus10005009 [exp]	4.7	0.9539
AT2G15320			Leucine-rich repeat (LRR) fami...		Lus10002822 [exp]	5.7	0.9475
AT3G48700		ATCXE13	carboxyesterase 13 (.1)		Lus10012073 [exp]	6.3	0.9454
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	6.5	0.9684

Compare expression of checked genes

Lus10025005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.