Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 53 / 4e-07 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 47 / 3e-05 ATRPA70D Replication factor-A protein 1-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027612 [exp] 634 / 0 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10039353 [exp] 253 / 3e-76 ND / Lus10042979 [exp] 238 / 2e-69 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003025 [exp] 204 / 2e-59 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10001889 [exp] 177 / 2e-53 AT1G52950 42 / 6e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034056 [exp] 176 / 1e-48 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1) Lus10008725 [exp] 158 / 1e-45 ND 38 / 0.003 Lus10029961 [exp] 164 / 2e-43 AT1G54730 429 / 3e-144 Major facilitator superfamily protein (.1.2.3) Lus10036312 [exp] 162 / 6e-43 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057300 [exp] 54 / 3e-07 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.019G061550 [exp] 47 / 3e-05 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025008 pacid=23148428 polypeptide=Lus10025008 locus=Lus10025008.g ID=Lus10025008.BGIv1.0 annot-version=v1.0 ATGCGCCTCCTGCACCTTTGGAAACTTGGGAAGCCTGGCGAACCCGGTAATTTTTACGCGCTCGGCACGCTATGGACCGATTCCGAGGGTACACGGATTC AGGGTGATGCCCTGAGGAATTTTGCACCGACCATTGAGAAGCGCATATCTGTCGGTTCTGTGTATAAGATATCGGAATACTCACTCCGCCCTCCCCGTTC TTCATTCCGCTCATGTCCCTTCCCACACTGGTTGAATCTCACACCCACCACCAAGTTCGAACTTCAACCCCCGACTGAACCACCGTTCCTTGAGGATGCC TTCGATTTCCTCCCCTTTACCGTGCTCCCGGATCGGATGTCTGATTGCCCATACTTGAACGCTTTCTTCCAGATGTGCTGGGAAAGGTCGTCAAGATTGG CCCCCCCCAGCCATGTTGAACGCCCATACGGCGTCACCCCTGTGCAATCCCTAACCATTATCAATGCTAGTGGCGTGCGTGTTGAAGTGTCGTTATGGTC CGAACTGGCCTTTATCCTGGACGCAGATATGTTACCCCTTGATGATGTTGCTGAGCCCGTCATCGTTGCTCTGTCGGCCTTCCGCATTGGCAGATTCCAT GGTTTGCTTCTGTGCACCCTTTGTTTCACCACATACCCCGAACCTTGCTTTTTTCCATATGTCGTCCTGGCCCATGTGCATATGATATTACAGCCACTAG CGTGCAGGCGAGCCGTGTTGTTCTACAGCCTCGATACCCAGCTGCTGACGAGCTATGCGCATAATTCCACGACAGAGACCACTTTCATATTGCTTGGCCT CACAGCCGACCGAATACTACCCATCACAGCAACTGAACTAGCACGAGCCTATCCCAATGACTACGGCGACCTCCCACCCCCAATTCAGGTATTGGTCGGC CAGAACGTAACTTTCAAAGTCCAGCTGCCCCGTCAAATTCATGCTAGCCCCTACGATGAGTTTCGTATCACCAAAATTTGGGGCTTGGTGGCTCACCATG CTCAACTACTGGCTCAACTACCCCCGCCACCCTCTCAGCCGCCAAGTCCGCCTGCTCGCCATGACACTCCTATCCCTCCGGACCCAAACTATGTCCCCCC AGTCCTCCTGTATCCGAATGCTGCGAAGGGACCAGCCGTAGCCGACCTCTTCGCCCCTACTACATACCCTTGCTCTTCCTCTGCCCTCCCTTCTTCCAGC ATTTGCTCTATATGCACATCGCTAACATTTGTACCCATACCCAACACCTCCGCCATTGCCAATACATCTGCACCTGTAACTCCATCACCTTTAGTGAATA GCCCTTCCGGCCTGTGGCCCGGAAGTCCCACATCTCTTACACCTACTGTCACAGCTCCTCTCATGCCACCTCCTGTTGAAGTGGCAGCTTCCCCGTTGGC CTCGGTCAAACGTGAGCAACTCACGCGTCGGAAGACACCTGTTCGTGCAAAGAAGGAGAAACTAGCAACCCCGCACCCACCTGAGCCTCTAGAGCATACA ATGTCCAGTAGGGGGCGCCAGCGCACCCGGAAGTGGCTCTTTGATGCCTAG
AA sequence Show only first row Show all	>Lus10025008 pacid=23148428 polypeptide=Lus10025008 locus=Lus10025008.g ID=Lus10025008.BGIv1.0 annot-version=v1.0 MRLLHLWKLGKPGEPGNFYALGTLWTDSEGTRIQGDALRNFAPTIEKRISVGSVYKISEYSLRPPRSSFRSCPFPHWLNLTPTTKFELQPPTEPPFLEDA FDFLPFTVLPDRMSDCPYLNAFFQMCWERSSRLAPPSHVERPYGVTPVQSLTIINASGVRVEVSLWSELAFILDADMLPLDDVAEPVIVALSAFRIGRFH GLLLCTLCFTTYPEPCFFPYVVLAHVHMILQPLACRRAVLFYSLDTQLLTSYAHNSTTETTFILLGLTADRILPITATELARAYPNDYGDLPPPIQVLVG QNVTFKVQLPRQIHASPYDEFRITKIWGLVAHHAQLLAQLPPPPSQPPSPPARHDTPIPPDPNYVPPVLLYPNAAKGPAVADLFAPTTYPCSSSALPSSS ICSICTSLTFVPIPNTSAIANTSAPVTPSPLVNSPSGLWPGSPTSLTPTVTAPLMPPPVEVAASPLASVKREQLTRRKTPVRAKKEKLATPHPPEPLEHT MSSRGRQRTRKWLFDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10025008 [exp]	0	1

Compare expression of checked genes

Lus10025008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.