Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15510 1020 / 0 VAC1, ATECB2 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 555 / 0 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 550 / 0 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 509 / 3e-169 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 510 / 8e-167 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 495 / 4e-163 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 488 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02010 473 / 3e-155 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 465 / 6e-154 MEF22 mitochondrial editing factor 22 (.1) AT5G16860 470 / 8e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026460 [exp] 1556 / 0 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 547 / 0 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 533 / 1e-178 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 521 / 3e-173 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 518 / 6e-171 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 516 / 2e-170 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 508 / 5e-169 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035788 [exp] 493 / 3e-163 AT3G16610 636 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035164 [exp] 478 / 6e-157 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G058700 [exp] 1161 / 0 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 587 / 0 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 543 / 0 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 542 / 0 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G006800 [exp] 524 / 2e-175 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 523 / 4e-173 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 520 / 1e-171 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G178200 [exp] 496 / 2e-164 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G058900 [exp] 501 / 3e-163 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 494 / 1e-162 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025009 pacid=23148452 polypeptide=Lus10025009 locus=Lus10025009.g ID=Lus10025009.BGIv1.0 annot-version=v1.0 ATGCGGCGGGAGAAGGCTCTGGTTAAGGAGGATAGTTTCATTGCTCTGGCAAGACTCTGCGAATTCCGAAGAGGACGTAAGGAGGGTCGTTTTGTGTACG AATTTGTGCTGCAATCGTTGATGATTCCTTTGAGTCTTGGGCTTGGGAACGCATTGCTTAGTATGTTTGTGCGGTTTGGCGATGTGGGTAGTGCTTGGAA CGTGTTTGGCAGAATGGGCGAGAGGAATTTGTTCTCATGGAATGTTCTTGTTGGTGGGTATTCAAAAGGAGGCTTCTTTGATGAGGCTCTGTGTTTGTAC CATAGAATGTTGTGGATTGGTATTCGGCCTGATGTCTATACTTTCCCTTGTATATTGAGGAGTTGTGGTGGGGCGCAGGACATTTTACGGGCAAGAGAGC TCCACGCCCATGTGATAAGATTTGGTTTTGAGGTGGAGGTTGATATTGTGAATGCACTAATTACAATGTATGTGAAGTGCAAAGATGTGGAAATGGCTGG TAAAGTATTTGATAACATGCTCATCAGGGATATAATATCATGGAATGCAATGATTTCTGGATTTTTCGAGAACGGGGAGTGTCTGAGAGGCTTGAAGTTA TTCTTTGAAATGCGAGAGCTTTCCATCAATCCAGATTTGATGACCATGACTAGCGTAATCTCAGCTTGTGCCCTGCTTGCTGACGATAGATTCGGGCGGG AAGTTCATGGGTATGTGGTGAGAACTGGTTTTGCTGATGATGTTTCAGTGTCCAATTCGTTGATTGATTTTTACTCCCGCGTTGGTAACTGGAAAGAAGC AGAAGAGAAGTTTTTAGGTATGAAATTTAGAGATGTAGTGTCATGGACGACAATGATTTCATGCTATGAGGATAACTCGTTGTCTCAGAAGGCATTAGAA ACTTTCATGAGCATGGAGGTGGAAGGAATTGAGGCTGATGAGATGACAATAGCTAGTGCGCTATCTGCTTGTGCTAGTTTACACAATTTGGATATGGGTG TGAAGCTTCATGAGCTTTCCATTAGGACTGGTCATATATCATACACTATGGTCGCAAACTCACTTATTGACATGTACTCTAAGTGTGCATGCACTGACAA GGCTTCGGAGGTTTTCCATCAAATTTCGCGGAAGGAGGTGGTATCTTGGACTTCGATTATTGATGGCCTTCGAATCAACAAACAATGCATGGAGGCTTTG TTGTTCTTCTCGCTAATGATTAGAACCACAAAGCCAAATTCTGTTACTTTCATTTCTGCCTTGAGCGCTTGTGCTAGAATTGGTGCATTGATGTGTGGCA AAGAGATCCATGCTCATGTTTTAAAGAGTGGAGTAGGCTTTGATGGCTTCCTACCCAATGCTATTCTTGATATGTATGTAAGGTGTGGAAGGATGAGACC TGCACTGTATCAGTTTGACATGATCAAGAAAGATGTTGGGGCTTGGAATATTTTATTGAGAGGGTATGCTCGAAGGGGACAAGGATCATGGGCATTGGAA TTGTTCCGGAGAATGTTGGATGCTCAGGTAGTCCCTGATCAGATAACATTCATTTCTCTTTTATTGGGATGTAGTAGATCTGCTGGAATGGTCACTGCAG GTCTTGAATTATTCAAAAGTATGAAGTTTAAACATTCTATCACTCCAAGTTTGAAACACTATGCTTGCGTTGTTGATCTACTTAGCCGAGATGGCCAATT GGAGGAAGCATATGATTTTATAATGAAAATGCCCACAAAGCCAGATCAGGCAGTTTGGGGAGCCCTGTTAAATGGATGTAGAATTCACCGGAATGTCAAA CTTGGAGAACTTGCAGCTCATAAGGTATTCGAGCTCGGCCCTGAGAGCATAGGGTACTATGTTCTACTATGTAATCTTTATTCCGACACTGGTAAATGGG ATCAAGTTGTGAAAGTAAGAGAAAAGATGAAGAAAGCAGGCCTAGTTCTTGATCCTGGATGCAGTTGGATTGAAGCGAAGGGCAAAGTTCACGCTTTTCT TACTGGTGATAATTGCAACCATCCTCAATCAAAAGAGATGAATGTAGTTTTGGAGGGCTTTTATGCCAAAATGAAAGAAGCTGGTGAGGAATGTAGTAAC TGTAGAGATGAAGTTGAAAAATCAAAAGCTGACATGTTTTGTGGGCACAGCGAGAGACGAGCAATTGCATTTGGATTAATTAGTACGGCTCCTGGGGTGC CTATATGGGTAACGAAGAATCTCTATATGTGCCGAAGCTGTCATAGTGTAGTCAAATTCATTTCCAAGGTAGTCCGCCGAGATATATCAGTAAGGGATAC AGAAGGGTTCCACCATTTCAAGGATGGTGTATGTTCTTGTGGGGATGAAGGTTACCGGGAAGAGATTGGCAAGAATAGTTAA
AA sequence Show only first row Show all	>Lus10025009 pacid=23148452 polypeptide=Lus10025009 locus=Lus10025009.g ID=Lus10025009.BGIv1.0 annot-version=v1.0 MRREKALVKEDSFIALARLCEFRRGRKEGRFVYEFVLQSLMIPLSLGLGNALLSMFVRFGDVGSAWNVFGRMGERNLFSWNVLVGGYSKGGFFDEALCLY HRMLWIGIRPDVYTFPCILRSCGGAQDILRARELHAHVIRFGFEVEVDIVNALITMYVKCKDVEMAGKVFDNMLIRDIISWNAMISGFFENGECLRGLKL FFEMRELSINPDLMTMTSVISACALLADDRFGREVHGYVVRTGFADDVSVSNSLIDFYSRVGNWKEAEEKFLGMKFRDVVSWTTMISCYEDNSLSQKALE TFMSMEVEGIEADEMTIASALSACASLHNLDMGVKLHELSIRTGHISYTMVANSLIDMYSKCACTDKASEVFHQISRKEVVSWTSIIDGLRINKQCMEAL LFFSLMIRTTKPNSVTFISALSACARIGALMCGKEIHAHVLKSGVGFDGFLPNAILDMYVRCGRMRPALYQFDMIKKDVGAWNILLRGYARRGQGSWALE LFRRMLDAQVVPDQITFISLLLGCSRSAGMVTAGLELFKSMKFKHSITPSLKHYACVVDLLSRDGQLEEAYDFIMKMPTKPDQAVWGALLNGCRIHRNVK LGELAAHKVFELGPESIGYYVLLCNLYSDTGKWDQVVKVREKMKKAGLVLDPGCSWIEAKGKVHAFLTGDNCNHPQSKEMNVVLEGFYAKMKEAGEECSN CRDEVEKSKADMFCGHSERRAIAFGLISTAPGVPIWVTKNLYMCRSCHSVVKFISKVVRRDISVRDTEGFHHFKDGVCSCGDEGYREEIGKNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	0	1
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10026460 [exp]	3.2	0.8899
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	3.5	0.8892
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	3.5	0.8632
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	4.2	0.8735
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10039703 [exp]	7.3	0.8428
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	8.0	0.8431
AT5G46460			Pentatricopeptide repeat (PPR)...		Lus10015256 [exp]	8.1	0.7683
AT5G08510			Pentatricopeptide repeat (PPR)...		Lus10005987 [exp]	8.1	0.8380
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	9.2	0.8496
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10039594 [exp]	9.8	0.8481

Compare expression of checked genes

Lus10025009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.