Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38470 177 / 3e-49 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT4G35780 176 / 7e-49 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT1G14000 163 / 4e-45 VIK VH1-interacting kinase (.1) AT2G17700 164 / 1e-44 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT5G11850 164 / 2e-43 Protein kinase superfamily protein (.1) AT1G62400 152 / 8e-42 HT1 high leaf temperature 1, Protein kinase superfamily protein (.1) AT1G08720 157 / 4e-41 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT1G73660 157 / 6e-41 protein tyrosine kinase family protein (.1) AT5G03730 155 / 1e-40 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G31170 150 / 2e-40 Protein kinase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026461 [exp] 705 / 0 AT4G35780 179 / 7e-51 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 183 / 7e-52 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 183 / 4e-51 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 175 / 2e-48 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 175 / 5e-47 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10018895 [exp] 167 / 1e-45 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 162 / 9e-44 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 162 / 8e-43 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10030435 [exp] 154 / 7e-42 AT1G14000 748 / 0.0 VH1-interacting kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222600 [exp] 529 / 0 AT4G35780 175 / 1e-48 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179100 [exp] 192 / 1e-55 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 187 / 2e-54 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 189 / 2e-53 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 187 / 4e-53 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 179 / 6e-50 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 178 / 1e-49 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 176 / 7e-49 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 174 / 5e-48 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 172 / 2e-47 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10025010 pacid=23148433 polypeptide=Lus10025010 locus=Lus10025010.g ID=Lus10025010.BGIv1.0 annot-version=v1.0 ATGATGGTTGGAGGCGGCAAAAAACATGGCTCGCTTTTCAGTGGAAAGAAGAAAACATCATCGCCATTGGCGTCACCGCCGCCAATACTATCTTCACCTT CTGGGATTGGATGTTGCCGGCAGCTCCGTGACTGTGTTAGCATGAACTCAATTGTTTCATCCACCAAACTAATAAATGATAAACACCTTCAGCAGCAGCA GCAGCAGCAGCAGCATTTGATGGTCAGATCCCAACAGTGGAAGCAGGTGGAAGATCTAGAGAAGGAAGTGGAAAAGCAGAAGGAGATGAGGATAATGTAC AGAAAGAGGATGGAGAGGACCCAAGATTATCTCAGATTCTGCCTTCAAACTGCACAAGACCATGGCTTCCTTGACCTCATCATTGGCAACAAAGACTCCT CCTCATGCTGCAACATCTCTTCTGGGACAGGGACTCCCAATTCTACCAGTCCGATATATACAACAGCAATTCAGCAAGAACAACAACCACCACCATCACC ATTGGTAGTCCACTCTCATCTTTCCTCACTCATTAACCAGGCAAACTTCAGTGGATGGTACATCCATCCCCATGAGATAGAGTTAAAAGAGAAGATAGGT GAAGGCAGCACTGCAGAGATTTACAAAGGACTTTGGAAAGGGTTGGAAGTTGCTGTCAAGTGCATCTTCCCTCATTTCTTCAACGAGAGTACTGGCGTCA CTTTCTTCGCTCAGGAACTCGACACTCTCTCTAGGCAACGGCACCGTTTCATCCTCCAGTTCTTCGGTGCCTCCCTGGATCCACCAAACCACGCCTGGGT GGTCACAGAGTCCTTAGAGACAAACCTCAAGGAATGGTTACACGGACCTGGAAGCAGGAAAAAGGAAAGGTCTTTTCGTTTGCCTCCCTTCCTGGAGAGG CTGGCAAGGGCTGTTGAGATTTCTCAGGCTATGCAGTACCTCCACCAGCAGAAGCCTAATAAGGTCATCCATCGAGATCTCAAGCCAAGTAACATCTTTT TGGACGATGCCAATCATGTTAGGGTTGCTGACTTTGGACACGCTCGCTTCTTGGAGGACACTCAAATGGCACTCACCGGCGAGACAGGAACCTATGTGTA TATGGCGCCAGAGGTGATCTCTTGTCAGCCTTACAATGAGAAATGTGATGTCTACAGTTTTGCGGTAATTCTCAATGAGATTATCACTGGAAACTATCCT TACGTTGACTCAGATTTTGGTCCTACCAAGATAGCAATGCAAGTTGCAGATGGTAGCCTGAGGCCTGCACTACCAGCGGACGAAGATGGCCAACTGGCGG AGCTAATTGATCTCATATGTGTGTCCTGGGATCAAGATCCGTCCCTTAGACCCTCTTTTGCTACCATCACTTTCGCTCTCAAGGAAATTCAATCAACCTT CGCATCACATATTCCACAAAGTTAG
AA sequence Show only first row Show all	>Lus10025010 pacid=23148433 polypeptide=Lus10025010 locus=Lus10025010.g ID=Lus10025010.BGIv1.0 annot-version=v1.0 MMVGGGKKHGSLFSGKKKTSSPLASPPPILSSPSGIGCCRQLRDCVSMNSIVSSTKLINDKHLQQQQQQQQHLMVRSQQWKQVEDLEKEVEKQKEMRIMY RKRMERTQDYLRFCLQTAQDHGFLDLIIGNKDSSSCCNISSGTGTPNSTSPIYTTAIQQEQQPPPSPLVVHSHLSSLINQANFSGWYIHPHEIELKEKIG EGSTAEIYKGLWKGLEVAVKCIFPHFFNESTGVTFFAQELDTLSRQRHRFILQFFGASLDPPNHAWVVTESLETNLKEWLHGPGSRKKERSFRLPPFLER LARAVEISQAMQYLHQQKPNKVIHRDLKPSNIFLDDANHVRVADFGHARFLEDTQMALTGETGTYVYMAPEVISCQPYNEKCDVYSFAVILNEIITGNYP YVDSDFGPTKIAMQVADGSLRPALPADEDGQLAELIDLICVSWDQDPSLRPSFATITFALKEIQSTFASHIPQS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10025010 [exp]	0	1
AT3G03550			RING/U-box superfamily protein...		Lus10035677 [exp]	2.2	0.7982
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020722 [exp]	8.9	0.7601
AT4G25970		PSD3, PSD2	phosphatidylserine decarboxyla...		Lus10015839 [exp]	10.6	0.7274
AT1G69020			Prolyl oligopeptidase family p...		Lus10032378 [exp]	11.4	0.7738
AT4G26740		CLO1, ATPXG1, A...	CALEOSIN1, ARABIDOPSIS THALIAN...		Lus10011775 [exp]	12.2	0.7828
AT3G03550			RING/U-box superfamily protein...		Lus10037264 [exp]	14.4	0.7522
AT2G40920			F-box and associated interacti...		Lus10020082 [exp]	15.9	0.7554
AT2G03810			18S pre-ribosomal assembly pro...		Lus10004632 [exp]	20.5	0.7357
AT5G66005			Expressed protein (.1.2.3)		Lus10035990 [exp]	21.2	0.7359
AT1G53120			RNA-binding S4 domain-containi...		Lus10041931 [exp]	22.3	0.7531

Compare expression of checked genes

Lus10025010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.