Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12040 139 / 3e-40 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT5G22300 45 / 1e-05 AtNIT4, NIT4 nitrilase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026464 [exp] 225 / 1e-72 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10005201 [exp] 45 / 1e-05 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 44 / 5e-05 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10018449 [exp] 42 / 0.0002 AT5G22300 281 / 6e-92 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G222900 [exp] 155 / 9e-46 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.004G199600 [exp] 44 / 3e-05 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.006G207700 [exp] 43 / 0.0001 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.016G074200 [exp] 41 / 0.0003 AT5G22300 358 / 1e-121 nitrilase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10025012 pacid=23148444 polypeptide=Lus10025012 locus=Lus10025012.g ID=Lus10025012.BGIv1.0 annot-version=v1.0 ATGAAGTCAGCCATATCGACAGCCTTCCATTCGAGCAAGCTTCATAGCTTTCCCTTCTCTTGCTCTCCTCGCCTCTTCTTCTGTCACAGGACGTCCTCCA ACGCTTCTTGCTTTACGAAATTTATCCAACCCTTAGAACACAATCGCCGAGGGAACCTTCTGAATTTGAGGCGAATTAGCACCTTGTTCACTCCAGTCAT GACTGCCTCTTTCAAGCCTGAGCAAGCTAGGGCACCACCGGCCCTTCCTTTGCCCAGTCCTCCTGTTTGCATGTTCAAAATAGGGCTGTGCCAGTTGGCA GTGACGGCAGATAAGCAGCTTGATATCGAGCATGCCCGTTTCCCTCTATACGCCAAGGACATTGACGCCGGTGGTGATGCTTCTCCTTCAACGGCAATGC TCTCTGAAGTTGCTAAGAAGCTGAATGTCACCATAGTTGGTGGCTCCATACCTGAACGGTCAGGTGATAGGCTGTATAACACTTGCTGTGTCTTTGACGC TCACGGGAAATTATTGGCAAAGCACAGGAAGGACCTTCCTGCCATTGTCGAAGCAGCGGCGAGATGGTCTTTATCAATTGGTGGATATACAAAGACTCAA ACACTGAATCTTGAGGAGATTCTTGGAGGATGGCCATTGGGCTATAGTATGTAA
AA sequence Show only first row Show all	>Lus10025012 pacid=23148444 polypeptide=Lus10025012 locus=Lus10025012.g ID=Lus10025012.BGIv1.0 annot-version=v1.0 MKSAISTAFHSSKLHSFPFSCSPRLFFCHRTSSNASCFTKFIQPLEHNRRGNLLNLRRISTLFTPVMTASFKPEQARAPPALPLPSPPVCMFKIGLCQLA VTADKQLDIEHARFPLYAKDIDAGGDASPSTAMLSEVAKKLNVTIVGGSIPERSGDRLYNTCCVFDAHGKLLAKHRKDLPAIVEAAARWSLSIGGYTKTQ TLNLEEILGGWPLGYSM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12040			Nitrilase/cyanide hydratase an...		Lus10025012 [exp]	0	1
AT5G44090			Calcium-binding EF-hand family...		Lus10003628 [exp]	1.4	0.9353
AT1G11330			S-locus lectin protein kinase ...		Lus10015422 [exp]	2.0	0.9254
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10012040 [exp]	3.2	0.9087
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10037485 [exp]	3.7	0.9120
AT5G14520			pescadillo-related (.1)		Lus10001362 [exp]	4.2	0.9137
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10039959 [exp]	4.9	0.9179
AT1G76480			unknown protein		Lus10006035 [exp]	7.1	0.9153
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Lus10005004 [exp]	8.5	0.8797
AT5G59190			subtilase family protein (.1)		Lus10000396 [exp]	8.6	0.8542
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	8.8	0.9242

Compare expression of checked genes

Lus10025012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.