Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05670 160 / 2e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT1G02060 159 / 7e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G46100 146 / 3e-39 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 143 / 3e-37 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G03560 138 / 2e-35 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT4G26680 130 / 4e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G09900 130 / 7e-33 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G37230 129 / 2e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G22960 129 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G06000 127 / 3e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026465 [exp] 728 / 0 AT1G05670 197 / 6e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10017658 [exp] 149 / 3e-39 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015397 [exp] 139 / 8e-37 AT5G46100 593 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013077 [exp] 140 / 3e-36 AT5G40400 587 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 137 / 3e-35 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014242 [exp] 134 / 3e-35 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018567 [exp] 134 / 3e-34 AT1G03560 862 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040633 [exp] 133 / 1e-33 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 131 / 3e-33 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223300 [exp] 470 / 2e-163 AT1G05670 208 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.018G050100 [exp] 193 / 9e-55 AT4G12070 133 / 6e-33 unknown protein Potri.014G056400 [exp] 172 / 2e-47 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 146 / 1e-38 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 144 / 1e-37 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 139 / 1e-36 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 138 / 9e-36 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G166001 [exp] 136 / 2e-35 AT4G26680 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G035700 [exp] 137 / 4e-35 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.011G057900 [exp] 134 / 5e-35 AT5G46100 627 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025013 pacid=23148466 polypeptide=Lus10025013 locus=Lus10025013.g ID=Lus10025013.BGIv1.0 annot-version=v1.0 ATGGCAACTCCCTTGAGAAATCTGTCCTTCCGCGTTCATCCTTCAGAGCTCGGCCCACTGATCAGCGCCATTACTTCGTGCCTTAAAACCATAAACCCTC GAAACCTCAACTATTTGCACATCAATCCAGCCCCTCTGAATCAATTCTCGCCCTACCTAGACTACAGCTTAGTTCTTCAAGTCATCAACACCCAATCAAA CCCATACCATGCCCTCTTCTTCTTCAACTGGGCCTCAAATCCTTTACCCAACCCTAACAAGTACACTCATAATAACAAATGTTTCGTCGCCATTATCGAC CTTCTTCTATCTCACTCCCTTTTTTCCATTGCTTCTTCCCTCCTCGAAACCTCTAACAAGCTCTCAGATTTCATGATCAGCAAGTTCATCACGGCGAATG GCCATCTGGGCAATGTAAAAGCTGCCATCTTTTGGTTTCACAGAGCGAAAACCATTGCGAATGGAGATTGCTTAGACTCCTGTAATGCCATTTTGGGTGC CATGTTGAAGACCAATCGAATTGGCTTGGCTCAGTCGTTTTTCTATCAGATTGTGAGCTGTGACAGAGTGAAACCTGATGTTTCTACTTATACCACGATG ATTAGAGGTTTTTGCAAAATGGGTATGGTTGAGAAAGCACGGAAGCTGTTTGATGAAATGCCTTGCAAGCCTAACTCGTTAACGTATAATACATTGATTG ATGGGTACTGTAAGAAGGGAGGGATGGACTCCGCCAAGGTAATATTCTACAGGATGATTGGCGATTCAAGTTGTTCACCTGGCACAGTTACTTATACTAC TTTGATTGACGGGTATTGTAAGAAAGGCGAGTTTGACGAGGCATTGAAGTGGAAGAGTGAGATGATGAATCGGGGAGTCAACCCGAATTTGCTGACCTAC AATGCTTTAATCTATAATTTGTGTTTGAGAGGAAACGTTGATGAGGCCAAGAAGCTCATAATAAAAATGAGGCTGAATGGAGTCAGAGAAAATACTGCAA CTTACCTAAGCATCTTGAAAGGCCTTTCCAACGTAGGGAAGTCTGATGAAGTAGTACAGTATTTCAAGGAGCGATTCGGGAAAGAAATAAAACCAGATCC GAAAGCCTATGGTGAAGGAGTACTGCAAGATGAAGAAACCGATTGCGGCCATCTCTATCTTGAAGGAAATGCATGCTAA
AA sequence Show only first row Show all	>Lus10025013 pacid=23148466 polypeptide=Lus10025013 locus=Lus10025013.g ID=Lus10025013.BGIv1.0 annot-version=v1.0 MATPLRNLSFRVHPSELGPLISAITSCLKTINPRNLNYLHINPAPLNQFSPYLDYSLVLQVINTQSNPYHALFFFNWASNPLPNPNKYTHNNKCFVAIID LLLSHSLFSIASSLLETSNKLSDFMISKFITANGHLGNVKAAIFWFHRAKTIANGDCLDSCNAILGAMLKTNRIGLAQSFFYQIVSCDRVKPDVSTYTTM IRGFCKMGMVEKARKLFDEMPCKPNSLTYNTLIDGYCKKGGMDSAKVIFYRMIGDSSCSPGTVTYTTLIDGYCKKGEFDEALKWKSEMMNRGVNPNLLTY NALIYNLCLRGNVDEAKKLIIKMRLNGVRENTATYLSILKGLSNVGKSDEVVQYFKERFGKEIKPDPKAYGEGVLQDEETDCGHLYLEGNAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10025013 [exp]	0	1
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	16.8	0.7998
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	19.1	0.7872
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	21.6	0.7974
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	28.1	0.7872
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	39.5	0.7717
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10014514 [exp]	45.0	0.7434
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Lus10038898 [exp]	52.5	0.7643
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	56.3	0.7509
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	57.3	0.7607
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10041327 [exp]	65.0	0.7445

Compare expression of checked genes

Lus10025013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.