Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64320 70 / 1e-14 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 66 / 4e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 66 / 5e-13 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14770 65 / 6e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 65 / 6e-13 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63150 63 / 3e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 62 / 6e-12 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 62 / 7e-12 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 61 / 2e-11 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12100 61 / 2e-11 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026465 [exp] 260 / 1e-85 AT1G05670 197 / 6e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10042529 [exp] 73 / 2e-15 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 69 / 2e-14 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014660 [exp] 67 / 2e-13 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000554 [exp] 67 / 2e-13 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021989 [exp] 67 / 2e-13 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032789 [exp] 64 / 9e-13 AT1G09820 250 / 4e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013832 [exp] 64 / 1e-12 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005540 [exp] 63 / 5e-12 AT5G18475 562 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223300 [exp] 134 / 2e-37 AT1G05670 208 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050240 [exp] 79 / 1e-17 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 77 / 3e-17 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 76 / 1e-16 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050300 [exp] 74 / 5e-16 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 74 / 6e-16 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046200 [exp] 73 / 9e-16 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050120 [exp] 72 / 1e-15 AT1G12700 295 / 3e-94 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 71 / 4e-15 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.017G131400 [exp] 69 / 2e-14 AT1G09680 669 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10025014 pacid=23148457 polypeptide=Lus10025014 locus=Lus10025014.g ID=Lus10025014.BGIv1.0 annot-version=v1.0 ATGGAGGTGGGAGAGCTTAGCTTGGCAACGTATGTTCTAAAGCAAATGAAGAAGATGGGGGGGTGCAACCCAAATTTCATATCGTATCGCACAGTGATAT CTAACCTTAGTAAGAGCAGTGGTTGTATGAAGGAAGCAGAGAAGATTGTCAAAGATATGGTCTCAGACGGAGTTCCTATGGACGCAAGCATTTACAGTTG TTTAATTTATGGATATTGCGAGGCAGGAGATGTCAGAATGGCAACCAAAGTTTTCCATGAAGCGATTAAGAAGGGGTGCGTTGTCAGCTTAGAGGCTTTT ACAGCGTTCATCAAACGGTTAATAAGTGAAAAGAAGGAAGTAATTGGTGCTGAGAATCTGTTGAAAGAGATGTGTAAGAGATGTGTTGTTGCTGAAACTG CTGGCTATCGGCAAGTCCTCGATGGCTACATGGGAATCGGCCCCTAG
AA sequence Show only first row Show all	>Lus10025014 pacid=23148457 polypeptide=Lus10025014 locus=Lus10025014.g ID=Lus10025014.BGIv1.0 annot-version=v1.0 MEVGELSLATYVLKQMKKMGGCNPNFISYRTVISNLSKSSGCMKEAEKIVKDMVSDGVPMDASIYSCLIYGYCEAGDVRMATKVFHEAIKKGCVVSLEAF TAFIKRLISEKKEVIGAENLLKEMCKRCVVAETAGYRQVLDGYMGIGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10025014 [exp]	0	1
					Lus10032893 [exp]	3.9	0.7550
AT2G20540		MEF21	mitochondrial editing factor ...		Lus10030125 [exp]	7.4	0.6996
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	9.2	0.7396
AT3G60520			unknown protein		Lus10042880 [exp]	9.2	0.7326
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10035128 [exp]	26.8	0.7166
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	27.1	0.7094
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	33.0	0.6720
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	42.4	0.7005
AT5G59500			protein C-terminal S-isoprenyl...		Lus10004974 [exp]	60.2	0.6930
AT5G05800			unknown protein		Lus10007443 [exp]	63.5	0.6289

Compare expression of checked genes

Lus10025014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.