Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26200 376 / 2e-130 Mitochondrial substrate carrier family protein (.1) AT1G72820 376 / 3e-130 Mitochondrial substrate carrier family protein (.1) AT5G15640 225 / 3e-71 Mitochondrial substrate carrier family protein (.1) AT1G34065 75 / 9e-15 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G51050 71 / 4e-13 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G39460 67 / 3e-12 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT2G30160 64 / 3e-11 Mitochondrial substrate carrier family protein (.1) AT1G07030 63 / 5e-11 Mitochondrial substrate carrier family protein (.1) AT2G33820 62 / 1e-10 ATMBAC1 Mitochondrial substrate carrier family protein (.1) AT5G64970 62 / 2e-10 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026466 [exp] 630 / 0 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 609 / 0 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 224 / 1e-70 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 224 / 1e-70 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 221 / 6e-68 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 182 / 2e-55 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10038063 [exp] 140 / 2e-41 AT1G72820 108 / 7e-30 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 74 / 3e-14 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 71 / 1e-13 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050300 [exp] 442 / 3e-156 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.006G223600 [exp] 431 / 8e-152 AT1G72820 429 / 7e-151 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 229 / 5e-73 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 226 / 1e-71 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 192 / 2e-58 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 87 / 5e-19 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 79 / 1e-15 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.001G182000 [exp] 73 / 2e-14 AT1G79900 424 / 1e-150 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 72 / 8e-14 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.001G282400 [exp] 70 / 3e-13 AT1G07030 426 / 1e-150 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10025015 pacid=23148453 polypeptide=Lus10025015 locus=Lus10025015.g ID=Lus10025015.BGIv1.0 annot-version=v1.0 ATGAGCCCAGGTGCCACCGAAGAAGATTCACGATCAGAGATTCACATCCCAGCAGATATCGACTGGCAGATGCTGGACAAATCCAGGTTCTTCTTTCTCG GGGCAGCACTCTTCTCCGGCGTATCGGCCGCTCTTTACCCGGCCGTCGTCCTCAAGACTCGTTTACAGGTCATCCCAACTCAAATCTCATCCCTCAAACT GTCTCTGTCTATTATGAGCCACGAAGGCATTCGAGGATTCTACAGGGGTTTTGGATTTTCTTTGATGGGAACAGTCCCAGCTCGAGCCCTTTACATGTCA GCCCTCGAGCTCACTAAGAGCAGCGTAGGGACAACTGCGCTTAATTTAGGGTTTACGGATACTTGTGCTATTGCAATTGCTAATGCTGCTGCTGGGATGA GCTCAGCCATGGCTGCACAGCTTGTTTGGACGCCGATTGATGTTGTCAGCCAGAGGCTCATGGTCCAAGGTTGCAGCGGCGGCGGCAAGAACGTTGTTGC GCAATCGTGTCTTACAAATTCTTATGGTTATCTGAATGGAATCGATGCTTGTAGGAAGATTGTGTATGCTGATGGTTTGAGAGGGTTGTATAGAGGTTTT GGGATCTCAATCTTGGCATATGCACCCTCTAATGCTGTTTGGTGGTCTTCTTATTCTCTAGCACATAGATTTGTTTGGAGCTGTCTTAACTCTTCTACTT ACAAGGATAAAAGAGATGATGATAAGGATAGAGGTTCTGATTTCAAGTTCAATGGCCATGATTCGATAGCAATGTTAGGGGTGCAAGGGTTATGTGCAGC CATGGCTAGTGGAGCTTCAGCTGTTGTGACTATGCCAATTGACACGATTAAGACTAGGTTGCAGGTCCTTGAATGTGGGAGAAGGAAGCCATTGACAGTT AGAGAAACGGTAAGGAATTTGGTGAATGAAGGTGGATTTGCAGCTTGCTATAAAGGATTAGGACCGAGGTGGGTTTGTATGTCCATGTCTTCTGCAACTA TGATCACCACATATGAGTTCTTGAAGAGGCTGTCGACCAAGAGGAAAGAGGCTACTTTGGATTGA
AA sequence Show only first row Show all	>Lus10025015 pacid=23148453 polypeptide=Lus10025015 locus=Lus10025015.g ID=Lus10025015.BGIv1.0 annot-version=v1.0 MSPGATEEDSRSEIHIPADIDWQMLDKSRFFFLGAALFSGVSAALYPAVVLKTRLQVIPTQISSLKLSLSIMSHEGIRGFYRGFGFSLMGTVPARALYMS ALELTKSSVGTTALNLGFTDTCAIAIANAAAGMSSAMAAQLVWTPIDVVSQRLMVQGCSGGGKNVVAQSCLTNSYGYLNGIDACRKIVYADGLRGLYRGF GISILAYAPSNAVWWSSYSLAHRFVWSCLNSSTYKDKRDDDKDRGSDFKFNGHDSIAMLGVQGLCAAMASGASAVVTMPIDTIKTRLQVLECGRRKPLTV RETVRNLVNEGGFAACYKGLGPRWVCMSMSSATMITTYEFLKRLSTKRKEATLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26200			Mitochondrial substrate carrie...		Lus10025015 [exp]	0	1
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	1.4	0.8320
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10034585 [exp]	5.0	0.7761
AT5G47940			unknown protein		Lus10019713 [exp]	5.7	0.7558
AT1G77280			Protein kinase protein with ad...		Lus10028661 [exp]	6.0	0.7741
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	6.2	0.7781
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10021798 [exp]	6.5	0.7522
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	8.2	0.7771
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10034177 [exp]	17.3	0.7547
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	18.3	0.7415
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	19.9	0.7611

Compare expression of checked genes

Lus10025015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.