Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02400 348 / 1e-119 ATGA2OX4, ATGA2OX6, DTA1 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) AT1G47990 282 / 4e-94 ATGA2OX4 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) AT1G30040 277 / 8e-92 ATGA2OX2 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) AT2G34555 273 / 2e-90 ATGA2OX3 gibberellin 2-oxidase 3 (.1) AT1G78440 250 / 2e-81 ATGA2OX1 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) AT3G19010 126 / 2e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G10500 125 / 6e-33 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G51810 125 / 9e-33 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT5G24530 124 / 1e-32 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 123 / 4e-32 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009998 [exp] 625 / 0 AT1G02400 362 / 3e-125 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10004511 [exp] 470 / 6e-168 AT1G02400 347 / 3e-119 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10017094 [exp] 308 / 3e-104 AT1G02400 305 / 4e-103 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10037816 [exp] 300 / 1e-101 AT1G02400 298 / 4e-101 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Lus10023311 [exp] 249 / 4e-81 AT1G30040 381 / 6e-133 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Lus10038498 [exp] 179 / 3e-55 AT1G78440 258 / 2e-86 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Lus10032930 [exp] 142 / 2e-39 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 138 / 7e-38 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006350 [exp] 135 / 1e-36 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G191900 [exp] 441 / 2e-156 AT1G02400 394 / 7e-138 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.014G117300 [exp] 432 / 5e-153 AT1G02400 367 / 2e-127 DOWNSTREAM TARGET OF AGL15 1, ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 6, Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 6 (.1) Potri.008G101600 [exp] 358 / 9e-124 AT1G47990 350 / 2e-120 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.010G149700 [exp] 343 / 7e-118 AT1G47990 318 / 4e-108 Arabidopsis thaliana gibberellin 2-oxidase 4, gibberellin 2-oxidase 4 (.1) Potri.001G378400 [exp] 318 / 4e-108 AT1G78440 404 / 1e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.011G095600 [exp] 315 / 3e-106 AT1G78440 404 / 4e-141 Arabidopsis thaliana gibberellin 2-oxidase 1 (.1) Potri.004G065000 [exp] 296 / 2e-99 AT1G30040 448 / 6e-159 GIBBERELLIN 2-OXIDASE 2, gibberellin 2-oxidase (.1.2) Potri.011G150200 [exp] 140 / 8e-39 AT4G10500 323 / 1e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451500 [exp] 139 / 3e-38 AT4G10500 325 / 2e-110 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 138 / 6e-38 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10025016 pacid=23148459 polypeptide=Lus10025016 locus=Lus10025016.g ID=Lus10025016.BGIv1.0 annot-version=v1.0 ATGGTAGTCCCTTCCACAAATTCATTCCGGACAAGGAAAACCAGGGCGGTAGGAATTATCCCGACTATCGACCTCTCCTCCCCCGACCGATCCGCCCTGT CGGAGGCAATCGTCAATGCCTGCGAAGAATTCGGATTCTTCAAGGTGGTCAACCACGGCGTTGACGTGGATGTAGTTTCCCGGTGGGAGAATGAAGTCGC TGACTTCTTCGCCAAGCCTTCCAAGGAGAAACAGAGGGCCGGACCGGCCGCTCCTTTCGGCTATGGGAGCAAGAACATCGGCTGCAATGGCGACATGGGC GAGCTCGAGTACCTTACTCTTCACACCAACCCGGCTTCCATGTTCGAAAGATCGATGACCATTTCCGATGATCCTGAAAACTTCAGGTCAGCAGGGAATG ATTACATAGATGAGGTTAGGGAATTAGCATGTGAAATCCTTGATTTAACAGCGGAGGGATTGCAGGTCCAAAATAAATACGTATTTAGCCGGCTAATAAG GGACACCCATAGTGACTCGGTAATTAGGATTAACCACTATCCATGGGTTAAAATTGAGTGGGACCCAACTCCAAAAAGAATTGGTTTTGGGGAGCATTCT GACCCTCAGATCTTAACTCTTCTTCGATCCAACGATGTCCCTGGCCTCCAAATTTGCACTCGCGATGGCTTGTGGCTGTCCGTTCAACCTGACCCCAATG CCTTCTATGCCCTCGTTGGTGATGCATTTCAGGCATTGACAAATGGGAAGTTCGAGAGCGTGAGGCATAGGGCGCTAGCGAACTCGACAAGGGCGAGGAT GTCAATGATGTACTTCGGTGCACCTGCAATGGACGCATGGATATGTCCGGTGCCGGAAACAGTGTCGCTCGATTACCCATGTCAGTACGAACCTTTCACT TGGGGAGAGTTCAAGAGAGCTGCATACACAATGCGGTTGGCTGATACTCGTCTTGACCTCTTCAAAAAAGCACACAAGCTAGGAAACTAA
AA sequence Show only first row Show all	>Lus10025016 pacid=23148459 polypeptide=Lus10025016 locus=Lus10025016.g ID=Lus10025016.BGIv1.0 annot-version=v1.0 MVVPSTNSFRTRKTRAVGIIPTIDLSSPDRSALSEAIVNACEEFGFFKVVNHGVDVDVVSRWENEVADFFAKPSKEKQRAGPAAPFGYGSKNIGCNGDMG ELEYLTLHTNPASMFERSMTISDDPENFRSAGNDYIDEVRELACEILDLTAEGLQVQNKYVFSRLIRDTHSDSVIRINHYPWVKIEWDPTPKRIGFGEHS DPQILTLLRSNDVPGLQICTRDGLWLSVQPDPNAFYALVGDAFQALTNGKFESVRHRALANSTRARMSMMYFGAPAMDAWICPVPETVSLDYPCQYEPFT WGEFKRAAYTMRLADTRLDLFKKAHKLGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	0	1
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10028848 [exp]	3.0	0.9533
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	4.5	0.9426
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	5.7	0.9393
AT3G14610		CYP72A7	"cytochrome P450, family 72, s...		Lus10025006 [exp]	6.5	0.9215
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	6.5	0.9322
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	7.7	0.9366
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	8.7	0.9335
AT1G20550			O-fucosyltransferase family pr...		Lus10023948 [exp]	11.2	0.8120
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10001430 [exp]	11.6	0.8978
AT4G25300			2-oxoglutarate (2OG) and Fe(II...		Lus10004581 [exp]	11.7	0.9179

Compare expression of checked genes

Lus10025016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.