Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012497 [exp] 645 / 0 ND / Lus10007158 [exp] 622 / 0 ND / Lus10012429 [exp] 387 / 1e-133 ND / Lus10011659 [exp] 380 / 2e-131 ND / Lus10022149 [exp] 165 / 8e-49 ND / Lus10024215 [exp] 112 / 3e-27 ND / Lus10002071 [exp] 111 / 3e-27 ND / Lus10039674 [exp] 111 / 4e-27 ND / Lus10010826 [exp] 111 / 5e-27 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025017 pacid=23148456 polypeptide=Lus10025017 locus=Lus10025017.g ID=Lus10025017.BGIv1.0 annot-version=v1.0 ATGTCCAATCCTTGCTCCTCCTGCAATCAACCACCTGCCATTCAAGGAAATGATCTCTTCATTGCAGGTTTTCTGCGAAACCTGGGATGGGAATCTGCAC TCCTTCAGGCGCAGCAATCATTCGCTCCGCTGGCTGTCCGGCTGTTCTATTCAAACCTTCGGGAGAGCAGAATTCATCCGGGTACAATCACATCCATAAT TCTGGGAGAGCACATCCGGGTCTCCCCTGAGACTCTGGTCGTAATCCTGAATCTCTCACCTCAGGGTTTTGTCATTCGAACCTACGATGACATTTGGCGT CATGGCTTTGATATGACAATGGCGCTGAGGGTGCTTCTGGATTCCAGCTGGAGGGACCTGCCCATACCTGCAACCCTACGGGTCACTATCCTTCCACCTC ACCTACGACTTCTGCACTACTTTCTCACAAGAACTCTTCTTCCAAGGTCATACTCCAGAAATCTTCTCCTACCCCTCGATATATTTGTTCTATGGTGCGC AATCAATGGAAAGCCAGTGAGTCTGCCACATCTTATGCTCATGTTCATGCTGGAAGCGAGACTTGAGAGGTTTCCAGGAGACCTACCCTTTGCGTCGCAA ATCACAACACTTATGCTCAGGATGGGAGTTGATCTTTATGGTCTCACCGTCACGGAGCCACTCATCAGTGTTGATTTTCATGGGATTGCTAGCTCTCCTG TAGGCGATATCCTCGCTCTTCTTGATATCTCCCCACTTTCCTCCCCAATCATTCCCACAAGGGGGGGGGGGGGGGGGACAGAGGCACCCACACACAAAAA AACAAACCCCCAAAAAAATTACTCCTCCGACAAAGACTCCTCACCGTGGTCCCTGAACGACTCTAGGGAGTATGCGAGTCAAGATGAAAATAAAAAACAG CTATCGGACCATGGGAAGAAGGAGGAGGAACTTCCCTCACATAGAGATGAGACTGGAGAGGTCAACCTGCCCCATTGGGGGAAGATGCTTATGACCTCTC CATCAGTCATTGCTGAAATCAATGCATCCTTTATAGAAGACTTCCCCGATCCAGTAGAAAGGAAAGCTGCAAAAGAACAATGGAGACAAGACATGCTCCG AGAGAAAACGCCAACAAACAGGGATGAAGATGAGACTGAAGTCTATTCAGGTAAGAGGAAGAAGGATCATATCGTGATAGACGGTGCAAGCAAACGAGAT GATCGAGGGAAGATTGATGCTCTGCTTAGACCAAATGCTGCAAGTTTAATCTCTGATGAAGATTTAGCTGAGAAAATTGTGGATGTTAACAAGTACATCT TCATGAGCTCACAACTGGTCTACTAG
AA sequence Show only first row Show all	>Lus10025017 pacid=23148456 polypeptide=Lus10025017 locus=Lus10025017.g ID=Lus10025017.BGIv1.0 annot-version=v1.0 MSNPCSSCNQPPAIQGNDLFIAGFLRNLGWESALLQAQQSFAPLAVRLFYSNLRESRIHPGTITSIILGEHIRVSPETLVVILNLSPQGFVIRTYDDIWR HGFDMTMALRVLLDSSWRDLPIPATLRVTILPPHLRLLHYFLTRTLLPRSYSRNLLLPLDIFVLWCAINGKPVSLPHLMLMFMLEARLERFPGDLPFASQ ITTLMLRMGVDLYGLTVTEPLISVDFHGIASSPVGDILALLDISPLSSPIIPTRGGGGGTEAPTHKKTNPQKNYSSDKDSSPWSLNDSREYASQDENKKQ LSDHGKKEEELPSHRDETGEVNLPHWGKMLMTSPSVIAEINASFIEDFPDPVERKAAKEQWRQDMLREKTPTNRDEDETEVYSGKRKKDHIVIDGASKRD DRGKIDALLRPNAASLISDEDLAEKIVDVNKYIFMSSQLVY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025017 [exp]	0	1
AT3G07840			Pectin lyase-like superfamily ...		Lus10011030 [exp]	2.0	0.8846
					Lus10012132 [exp]	7.7	0.8432
AT5G36930			Disease resistance protein (TI...		Lus10005827 [exp]	8.8	0.7441
AT1G78580		ATTPS1	TREHALOSE-6-PHOSPHATE SYNTHASE...		Lus10015243 [exp]	8.8	0.7567
					Lus10010271 [exp]	10.5	0.8266
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10027514 [exp]	12.6	0.7805
					Lus10000890 [exp]	21.6	0.7400
AT3G12910	NAC		NAC (No Apical Meristem) domai...		Lus10015743 [exp]	22.3	0.7344
					Lus10013299 [exp]	26.1	0.6585
AT2G37890			Mitochondrial substrate carrie...		Lus10036193 [exp]	31.4	0.7195

Compare expression of checked genes

Lus10025017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.