Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62330 375 / 4e-126 Zinc knuckle (CCHC-type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010000 [exp] 806 / 0 AT3G62330 421 / 3e-144 Zinc knuckle (CCHC-type) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192800 [exp] 473 / 8e-165 AT3G62330 468 / 1e-162 Zinc knuckle (CCHC-type) family protein (.1) Potri.014G118100 [exp] 457 / 2e-158 AT3G62330 424 / 1e-145 Zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025019 pacid=23148420 polypeptide=Lus10025019 locus=Lus10025019.g ID=Lus10025019.BGIv1.0 annot-version=v1.0 ATGGCAACTACATCAGATATGGATGATGATGACTTTAAGGACATCTACAAAGAGTATACTGGCCCTGTAGCATCAACGGCTAACAATAACAAGGAGCCGC TGAAACCAAATAATCAGCCCCAAACTGGTTCGGACGAGGAAGAGGGGCCTCAGTCCGTTGACCCCAATGCCGTCCCAACTGATTTTACCAGTAGGGAGGC TAAGGTCTGGGAAGCTAAGTCGAAAGCAACAGAGCGGAACTGGAAGAAAAGGAAAGAAGAAGAGTTGATATGCAAAATCTGCGGTGAATCTGGTCATTTC ACTCAGGGGTGCCCATCTACTCTTGGCGCTAATCGCAAATTGCAAGATTTCATGGAAAGGGTTCCGGCTAGGGAGAAGCACATTAGAGCCCTATTTACTG AAAAGGTAATCGAAAGGGTTGAAAGAGATATCGGATGCAGGCTCAAAATGGATGAGAAGTTTATCATTGTTAGTGGAAAGGACAGGTTGATTTTGAAGAA AGGTGTTGATGCAGTCCACAGAGTGATTAAGGATGATGGTGATCATAAGGGCTCCTCTACTTCTCATATGAGCAGGTCTAGGTCACCTGAACGGAGTCCT CCCTCGTCTCATTTAAGACGCTCTGAACCTCAGAGGTCTTATCCAAGTTACACTCTTGATACATCACAATATCAACCGAGATTTGGAAGGCAAGATAAGA TTGTAGAAGATCATATTCGTGAGGATATGCAGAAATTCTCAAGAGGTTCTCCACAAGCTTATGGGAAAGATGGAAGTAGAGGTCGTGCAAGCCATTCCAA GTCTCCTGGTCGTCCACTGCGTCATAGTAGTGACTCGTATGGTTCATACGACGGTCACACCCGTAGCAGGATAGATGGGTGGGATGATGCAAGGAGACGG GGTCCTGAACCAACCGGCCAACAGTTTGAGTACTCTAGCTTCCCTCCGACTCTAGAAGAGTTCGAACTAGAATATAAAAAAGAGGCAATGATGCTCGCCA GGATCCATAACAAGGAAGAAGATGAAGAAAATAATAAACATCGCCAGACTATGAGCGACATTCGTGACAACTACTTCAAGAAACTAAATGCCTTGCGTGG CAATCACGGAAGACAGTTTGAGGATTTCTTTCATCAACTAGAGGACGACGCGCAAAGACAGCAAAAGGAAGTGCAGCACCAGATGGCCGGTTCGGATTAT GGAAGTTTCGGCAATCAACAACCCTATCCTGCCTATGATGGAGGAGGATCTTCGGCGCAATATCCTCACTTTGCCGGAGGAGCAAGTTTGTCCATGGGAT CAAGGCCCGCATACCAAGCTCATATGGAGAGTTATCCTCCAAGGCAGCCTCATAATGACAACTACGGTGAGTTTCAGCGTCCGAGGCATGCCGATTTCAG GAAATCATATAACCGTAACTAG
AA sequence Show only first row Show all	>Lus10025019 pacid=23148420 polypeptide=Lus10025019 locus=Lus10025019.g ID=Lus10025019.BGIv1.0 annot-version=v1.0 MATTSDMDDDDFKDIYKEYTGPVASTANNNKEPLKPNNQPQTGSDEEEGPQSVDPNAVPTDFTSREAKVWEAKSKATERNWKKRKEEELICKICGESGHF TQGCPSTLGANRKLQDFMERVPAREKHIRALFTEKVIERVERDIGCRLKMDEKFIIVSGKDRLILKKGVDAVHRVIKDDGDHKGSSTSHMSRSRSPERSP PSSHLRRSEPQRSYPSYTLDTSQYQPRFGRQDKIVEDHIREDMQKFSRGSPQAYGKDGSRGRASHSKSPGRPLRHSSDSYGSYDGHTRSRIDGWDDARRR GPEPTGQQFEYSSFPPTLEEFELEYKKEAMMLARIHNKEEDEENNKHRQTMSDIRDNYFKKLNALRGNHGRQFEDFFHQLEDDAQRQQKEVQHQMAGSDY GSFGNQQPYPAYDGGGSSAQYPHFAGGASLSMGSRPAYQAHMESYPPRQPHNDNYGEFQRPRHADFRKSYNRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62330			Zinc knuckle (CCHC-type) famil...		Lus10025019 [exp]	0	1
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	1.0	0.8019
AT2G28390			SAND family protein (.1)		Lus10021472 [exp]	2.8	0.7581
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	7.4	0.7783
					Lus10019108 [exp]	8.7	0.7260
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10025213 [exp]	8.8	0.7764
AT3G50670		U1SNRNP, U1-70K	U1 small nuclear ribonucleopro...		Lus10014317 [exp]	11.2	0.7572
AT1G17450			B-block binding subunit of TFI...		Lus10015659 [exp]	14.8	0.7563
AT4G24970			Histidine kinase-, DNA gyrase ...		Lus10022438 [exp]	15.7	0.7914
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	15.7	0.7787
AT5G51230	C2H2ZnF	AtEMF2, CYR1, V...	CYTOKININ RESISTANT 1, EMBRYON...		Lus10042997 [exp]	16.6	0.7951

Compare expression of checked genes

Lus10025019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.