Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025020 pacid=23148424 polypeptide=Lus10025020 locus=Lus10025020.g ID=Lus10025020.BGIv1.0 annot-version=v1.0 ATGATACCTGAAGCTGAAGCTGGAAAACTGGAAGCTAACTCAATCTTGACTCTGAACGGCTCAGGTGATGGAAATGAGCACCGGAACGAACTAAAAAGAA AGGCCTGGCCGGAGAATAACGCTGACCAGACGACAGCGACGCAGCGGCGGGCTGAAGAATCGCTCCAGTTTTACAGTAGGTTTAAGGCCTACGACACAGC AGAAGTGGCCCGGCCCAATTTCATGAGCCCCAGTGTGGTTGTTGCTGCTGCTGCAGATCAACATTTTGCCATCTTTTTCCTTTTCCCGATAATTATTGCC ACAACTGCTGGGTCTTTACAGATGGCGACAACAGCTACAATAATGGTAGAGGAGATGTCTCTCTCATTAGTTGATCAGTCGGAGAAGCTGCGTTTATTGG TGGGGCTCGTTGATGTCTCATCTTACGAGCTATTTCTAGTGGGTATTATATCTCACTAA
AA sequence Show only first row Show all	>Lus10025020 pacid=23148424 polypeptide=Lus10025020 locus=Lus10025020.g ID=Lus10025020.BGIv1.0 annot-version=v1.0 MIPEAEAGKLEANSILTLNGSGDGNEHRNELKRKAWPENNADQTTATQRRAEESLQFYSRFKAYDTAEVARPNFMSPSVVVAAAADQHFAIFFLFPIIIA TTAGSLQMATTATIMVEEMSLSLVDQSEKLRLLVGLVDVSSYELFLVGIISH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10025020 [exp]	0	1
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	4.8	0.8405
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	15.0	0.8076
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	18.3	0.7976
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	19.0	0.7464
					Lus10005948 [exp]	19.4	0.7440
					Lus10007802 [exp]	19.7	0.7984
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	20.2	0.7499
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	21.2	0.7708
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	21.3	0.7963
AT2G31420	B3		Domain of unknown function (DU...		Lus10039058 [exp]	22.6	0.7759

Compare expression of checked genes

Lus10025020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.