Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14300 65 / 5e-11 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT1G02550 54 / 5e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53840 55 / 7e-08 ATPME1 pectin methylesterase 1 (.1) AT2G47340 52 / 3e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G36659 50 / 1e-06 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17220 45 / 1e-05 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT1G23350 43 / 8e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53830 44 / 0.0002 ATPME2 pectin methylesterase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010002 [exp] 320 / 2e-105 AT3G14300 / A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10002420 [exp] 185 / 1e-55 AT3G36659 54 / 2e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001448 [exp] 133 / 6e-38 AT1G23350 48 / 7e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031132 [exp] 50 / 7e-07 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10033466 [exp] 49 / 7e-06 AT3G05610 556 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020909 [exp] 48 / 9e-06 AT3G05610 547 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031711 [exp] 46 / 2e-05 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038294 [exp] 44 / 0.0001 ND 42 / 4e-04 Lus10025807 [exp] 44 / 0.0002 ND 39 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119200 [exp] 121 / 6e-32 AT1G02550 97 / 2e-24 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G119400 [exp] 108 / 2e-26 AT1G02550 78 / 2e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194800 [exp] 103 / 2e-25 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G194900 [exp] 102 / 6e-25 AT1G02550 87 / 2e-20 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G195000 [exp] 87 / 2e-19 AT1G02550 76 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.013G013400 [exp] 50 / 2e-06 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 49 / 4e-06 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.001G209000 [exp] 47 / 1e-05 AT4G33230 483 / 2e-165 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072700 [exp] 47 / 1e-05 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 47 / 1e-05 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10025021 pacid=23148449 polypeptide=Lus10025021 locus=Lus10025021.g ID=Lus10025021.BGIv1.0 annot-version=v1.0 ATGGCGAAGGAAGATGAAAAAAGTGATTCTAAGAAGAAGAGTAAGGACGATGAGGTCGGAAAAAAGGAAAAAGATTCGAAAAAAGACGAAAAAGTGATTC TAAGGATAAGAGTAGTGACGATGATGACGATGAAAAGGAAAATGAATCAAAAAAAGAGGAAGAAAGTGATTCTGAGAAGAAAAGTCATGACGACGATGAT GATAAAAAAGAAAAGGAGTCAAAAGAAGACGAAGAAAGTGATTCGGAGAAGAAAAGTGAAAACGAGAAAAAAGAGAACATCCAAAGAAGACGACCGTAGC AATTCCAAAGAGAAAAGTGACAAAAAGAAAGATAAAAAAGATGACGATGACGATGATGACGAAAAGAAGGAGAAGAAAGACGATGATGATGATTACGAAA AGAAGGAGAAGAAAGAAGGCGATGATGATGACGAAAAGAAGGAGAAGAAAGAAGATGACGATGATGACGAAAAGAAGGAGACGAAAGAAGATGACGATGA TGACGAAAAGAAGGAGAAAGAAGATGACGATGATTACGAAAAGAAGAAGAAAGATGAGGATGATGACGAGAAGGAGAAATCAGAAAAAGATTCATCTGAA GAGAAAGATGGTGACGATAAGGTCGAAAAGGAAAAGAAATCAACACACAAAGAAGAAGAAGAAAGTGAAGGTTCCGAAGAGGAGGACAAATCATCTTCAT CAACGTTGAAGGACCCGATCCTCACCCAAAAAGTATGCGGGTCGACCCAATACCCTAAAGACTGTCTGAGTTCGATCTCGCCCTACTTCACGGGTGCTAC AGATCCAGAATCGGTATTGAAGATGGAGGTGCAAGCAGTAAGGGAGGGGTTCGTGAGCGCAATCAAGAAGGTGAAGAAGATGAAAGAGGAAGCGGAAGGG AAGTGGGACAAGAGCGCCCTTGACACGTGTGTAGAGAACTTCAGCCTCGGACTCGCTGATCTCGACACCGCGATGGACGCGATAGCAACACACGATGCAG ATGAGTTGCAGACAATGTTGAGCTCGGTACTAACGTACGTTACGACTTGTGAGGACTCAATGGCCGAGGACCCAAACTCAAATGACCTGCCGAACATAAC GAGCATGGAGCAGAAGTTGACGAACTTGGCTACCAATAGCTTGGACATAGCCGAGAAACAACTAAATTGA
AA sequence Show only first row Show all	>Lus10025021 pacid=23148449 polypeptide=Lus10025021 locus=Lus10025021.g ID=Lus10025021.BGIv1.0 annot-version=v1.0 MAKEDEKSDSKKKSKDDEVGKKEKDSKKDEKVILRIRVVTMMTMKRKMNQKKRKKVILRRKVMTTMMIKKKRSQKKTKKVIRRRKVKTRKKRTSKEDDRS NSKEKSDKKKDKKDDDDDDDEKKEKKDDDDDYEKKEKKEGDDDDEKKEKKEDDDDDEKKETKEDDDDDEKKEKEDDDDYEKKKKDEDDDEKEKSEKDSSE EKDGDDKVEKEKKSTHKEEEESEGSEEEDKSSSSTLKDPILTQKVCGSTQYPKDCLSSISPYFTGATDPESVLKMEVQAVREGFVSAIKKVKKMKEEAEG KWDKSALDTCVENFSLGLADLDTAMDAIATHDADELQTMLSSVLTYVTTCEDSMAEDPNSNDLPNITSMEQKLTNLATNSLDIAEKQLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10025021 [exp]	0	1
AT5G66440			unknown protein		Lus10014287 [exp]	11.3	0.6891
AT4G18425			Protein of unknown function (D...		Lus10013974 [exp]	138.0	0.5253

Compare expression of checked genes

Lus10025021 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.