Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02560 285 / 4e-96 NCLPP5, NCLPP1, CLPP5 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) AT1G66670 180 / 1e-54 NCLPP3, NCLPP4, CLPP3 CLP protease proteolytic subunit 3 (.1) AT5G45390 167 / 4e-50 NCLPP3, NCLPP4, CLPP4 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) AT5G23140 142 / 3e-41 NCLPP7, NCLPP2, CLPP2 nuclear-encoded CLP protease P7 (.1) AT1G11750 138 / 3e-39 NCLPP6, NCLPP1, CLPP6 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) AT1G12410 131 / 2e-36 EMB3146, CLP2, NCLPP2, CLPR2 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) ATCG00670 121 / 2e-33 PCLPP, ATCG00670.1, CLPP1 CASEINOLYTIC PROTEASE P 1, plastid-encoded CLP P (.1) AT4G17040 113 / 2e-29 HON5, CLPR4 happy on norflurazon 5, CLP protease R subunit 4 (.1) AT1G09130 105 / 4e-26 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010003 [exp] 504 / 0 AT1G02560 308 / 2e-105 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10002422 [exp] 278 / 3e-93 AT1G02560 361 / 4e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10001450 [exp] 275 / 4e-91 AT1G02560 365 / 1e-126 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Lus10007589 [exp] 153 / 8e-45 AT5G45390 293 / 2e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10012156 [exp] 152 / 3e-44 AT5G45390 293 / 1e-99 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Lus10000449 [exp] 148 / 3e-42 AT1G66670 285 / 1e-95 CLP protease proteolytic subunit 3 (.1) Lus10010979 [exp] 147 / 9e-42 AT1G66670 288 / 6e-97 CLP protease proteolytic subunit 3 (.1) Lus10040981 [exp] 145 / 2e-41 AT5G23140 350 / 1e-122 nuclear-encoded CLP protease P7 (.1) Lus10013434 [exp] 145 / 2e-41 AT5G23140 347 / 3e-121 nuclear-encoded CLP protease P7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119700 [exp] 290 / 9e-98 AT1G02560 493 / 6e-178 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.002G195200 [exp] 288 / 2e-97 AT1G02560 474 / 2e-170 NUCLEAR CLPP 5, NUCLEAR-ENCODED CLPP 1, nuclear encoded CLP protease 5 (.1) Potri.004G092100 [exp] 175 / 1e-52 AT1G66670 441 / 2e-156 CLP protease proteolytic subunit 3 (.1) Potri.003G103300 [exp] 165 / 3e-49 AT5G45390 383 / 9e-135 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1) Potri.007G071700 [exp] 145 / 2e-41 AT5G23140 383 / 1e-135 nuclear-encoded CLP protease P7 (.1) Potri.004G152900 [exp] 144 / 2e-41 AT1G11750 397 / 4e-141 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.009G114001 [exp] 140 / 5e-40 AT1G11750 353 / 2e-123 NUCLEAR-ENCODED CLPP 1, CLP protease proteolytic subunit 6 (.1.2) Potri.005G092600 [exp] 139 / 7e-40 AT5G23140 380 / 3e-135 nuclear-encoded CLP protease P7 (.1) Potri.001G115900 [exp] 128 / 3e-35 AT1G12410 408 / 3e-145 NUCLEAR-ENCODED CLP PROTEASE P2, EMBRYO DEFECTIVE 3146, CLP protease proteolytic subunit 2 (.1) Potri.001G130601 [exp] 123 / 6e-34 AT5G45390 239 / 2e-79 NUCLEAR-ENCODED CLP PROTEASE P4, CLP protease P4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00574 [flax] [poplar] CLP_protease Clp protease
Representative CDS sequence Show only first row Show all	>Lus10025022 pacid=23148412 polypeptide=Lus10025022 locus=Lus10025022.g ID=Lus10025022.BGIv1.0 annot-version=v1.0 ATGGCGAATTCCTGCGCTTCTTCTCTCAAATTCGGCTCTCTCGTCTTCTCCCCCAATCCTCTCTCCATTTCCGAGCCTCGAAGTCTCGCTCTACTTCCTT CGCGCCCCAACACTTCCTCCTCAAAGAAATCTCGCATCGTCGTTTCTTCTAGTTCCGCCCTGTTCCAGACGCTGGAGACAAGTTCTCGTCGCGGACTTTG GTCAATCAGGGATGATTTGGGATGCTCAGCTTCGTCTTACTCCCCCGCACAGGCCAATAGTGTCGAAATGATGGGACAGCCTCCATCTCCGGTGGTCGCT AAGCAGCTCCGGATTCTTCTTGATCAGCTTCTTCAACAGAGGATTATAAGATGCAGTGGACCACTGGATGAAACATTGGCGAACACCATTGTTACTCAGC TGCTCTATCTCGATTCTCTTGATTCTAAGGAGGACATCACCATCTATATAAACTGTCCTGGCGGATTAGTCACAGCTGGCATGGCGGTATTTGACATAAT GAGGCATGTCCGGGCTGATGTTTCCACTGTCTGTGTTGGACTAGCTTCTAGTATCGGAGCTTTCTTGCTTACAGCTGGAACCAAAGGTAAAAGATACAGC ATGCCGAGTTCAAGGATAATGATCCAACAGCCACTTGGTGGAGTTATAGGTCTCCAGACTGAGATAGGAATTCAGTCAGATGAATTGCTGCATCATAAAG CAAACCTGAATACGCATCTATCCCTCATTACTGGTCAGAGCCTCGACAAAATCTACGCCGACACTGAACGTGATTACTTCATGAGCCCGAAAGAAGCCAT AGCCTATGGACTTATCGATGGACTCGTCGTGAACCCTCTCAAAGCTCCCCAGCCTCTTGAATCTGCTGCAGGAAAGCAATGA
AA sequence Show only first row Show all	>Lus10025022 pacid=23148412 polypeptide=Lus10025022 locus=Lus10025022.g ID=Lus10025022.BGIv1.0 annot-version=v1.0 MANSCASSLKFGSLVFSPNPLSISEPRSLALLPSRPNTSSSKKSRIVVSSSSALFQTLETSSRRGLWSIRDDLGCSASSYSPAQANSVEMMGQPPSPVVA KQLRILLDQLLQQRIIRCSGPLDETLANTIVTQLLYLDSLDSKEDITIYINCPGGLVTAGMAVFDIMRHVRADVSTVCVGLASSIGAFLLTAGTKGKRYS MPSSRIMIQQPLGGVIGLQTEIGIQSDELLHHKANLNTHLSLITGQSLDKIYADTERDYFMSPKEAIAYGLIDGLVVNPLKAPQPLESAAGKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10025022 [exp]	0	1
AT4G12060			Double Clp-N motif protein (.1...		Lus10031116 [exp]	2.4	0.8625
AT4G12060			Double Clp-N motif protein (.1...		Lus10031694 [exp]	2.8	0.8640
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Lus10037128 [exp]	3.5	0.8630
AT5G17990		PAT1, TRP1	PHOSPHORIBOSYLANTHRANILATE TRA...		Lus10042050 [exp]	5.5	0.8165
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10010003 [exp]	7.9	0.8165
AT1G02560		NCLPP5, NCLPP1,...	NUCLEAR CLPP 5, NUCLEAR-ENCODE...		Lus10002422 [exp]	8.7	0.8343
AT5G23070			Thymidine kinase (.1)		Lus10039055 [exp]	9.4	0.8147
AT4G32915			unknown protein		Lus10006882 [exp]	12.5	0.7830
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037767 [exp]	13.0	0.8083
AT2G14880			SWIB/MDM2 domain superfamily p...		Lus10013893 [exp]	13.7	0.8454

Compare expression of checked genes

Lus10025022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.