Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02570 100 / 2e-24 unknown protein AT2G47360 92 / 3e-21 unknown protein AT1G02575 91 / 5e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010004 [exp] 300 / 3e-102 AT1G02570 96 / 2e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G119900 [exp] 120 / 6e-32 AT2G47360 204 / 1e-64 unknown protein Potri.002G195400 [exp] 117 / 7e-31 AT2G47360 162 / 3e-48 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10025023 pacid=23148413 polypeptide=Lus10025023 locus=Lus10025023.g ID=Lus10025023.BGIv1.0 annot-version=v1.0 ATGTACCGGCGGCGACAAGAAAGCAACGAACAACAGTCGTCCACGGCGAAGACGGCGTCGTTTTGGACGATGGGTTTGTTCGCAGCGGCCGAAGCCTTTC ACATCACCACGACAACCCTCCTCAGCCTCATCCTCCCCGTCTCATTCCTTCTCATCGCCAGATTTTCTTGCTACAATTACCTCATCGCCGATCAGGACAC GTCAGCCTCGTCGTGGTCGTCGACCACGTGGCTCAACACCCTCGTCAATGTCACTCTATACGGCGTCGTTTCGGTTGTCACCGTGTCCGCTTTGGTCAAC AGCATAATGGTCAAACCGGAACCGGTAGGATCATCGATTCGACCGAAAGGGTGTAAATATAACCGACTTCGGTGGTGCGGGGCTTGGATGTTGATATGTT GTCTTCATATTTCCGTCCGACTCGGGGCGGAGCTGGGCGGAAGTCGGAGTGCGATGGTGGCTGCTGTCGTGGCCGGGATTTCGGAGTTGAACGACCGAGA CCGAGTAGTTGGGTCGAGTAATAGCGGGTCAGGGTCGTTGATCAGGGTGGGTTTGTTCTTGGGTTTGTACGAGATCATGTTTTACTGGTTGAGTAATGTG GTTCGACCAGTGGTCGACAGTACGATTTTCGGTCGGGTTAGAGACGAGTGGTGGGTGCAGCGGGTGGTGACCGGTTTGAGCTTCGGCACGTTATGGTGGT GGTGGGGACTGAACGAGGAGGTAGAGTCGTTGGGCGTTGTGGCGGCCGCAAAATGGAACCGAGCCAATGAAATCGAAGACGGGTTCAACCTGGTAGGGTT GGACTTGGTGGGTTGGTGGCTCTATTACGTGACTTTTATTATTGGAATGGTTCGGGTGGCTAAGGGAGTGATGTGGGTCGGTTTGGTTTTGCTTTGTGAA CGAAGGGAAGTTGTTGTAAGTGGTTCGGTTGGTGACGATGAGTTGGGTGGAGTTGAAGACAAGGTTTGA
AA sequence Show only first row Show all	>Lus10025023 pacid=23148413 polypeptide=Lus10025023 locus=Lus10025023.g ID=Lus10025023.BGIv1.0 annot-version=v1.0 MYRRRQESNEQQSSTAKTASFWTMGLFAAAEAFHITTTTLLSLILPVSFLLIARFSCYNYLIADQDTSASSWSSTTWLNTLVNVTLYGVVSVVTVSALVN SIMVKPEPVGSSIRPKGCKYNRLRWCGAWMLICCLHISVRLGAELGGSRSAMVAAVVAGISELNDRDRVVGSSNSGSGSLIRVGLFLGLYEIMFYWLSNV VRPVVDSTIFGRVRDEWWVQRVVTGLSFGTLWWWWGLNEEVESLGVVAAAKWNRANEIEDGFNLVGLDLVGWWLYYVTFIIGMVRVAKGVMWVGLVLLCE RREVVVSGSVGDDELGGVEDKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02570			unknown protein		Lus10025023 [exp]	0	1
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	2.2	0.8724
AT1G08280			Glycosyltransferase family 29 ...		Lus10019538 [exp]	4.1	0.8974
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	5.1	0.8856
AT1G75590			SAUR-like auxin-responsive pro...		Lus10033161 [exp]	6.0	0.8499
AT3G18950			Transducin/WD40 repeat-like su...		Lus10021014 [exp]	6.2	0.8153
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	6.9	0.8765
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10039775 [exp]	8.1	0.8287
AT1G74030		ENO1	enolase 1 (.1)		Lus10038963 [exp]	8.5	0.8774
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	8.7	0.8464
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	14.5	0.8635

Compare expression of checked genes

Lus10025023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.