Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62420 162 / 7e-52 bZIP ATBZIP53 basic region/leucine zipper motif 53 (.1) AT1G75390 127 / 8e-38 bZIP ATBZIP44 basic leucine-zipper 44 (.1.2) AT2G18160 100 / 5e-27 bZIP GBF5, ATBZIP2 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) AT4G34590 94 / 7e-25 bZIP ATB2, ATBZIP11, BZIP11, GBF6 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) AT5G38800 61 / 3e-12 bZIP ATBZIP43 basic leucine-zipper 43 (.1) AT3G30530 60 / 8e-12 bZIP ATBZIP42 basic leucine-zipper 42 (.1) AT5G49450 59 / 1e-11 bZIP ATBZIP1 basic leucine-zipper 1 (.1) AT1G13600 59 / 3e-11 bZIP ATBZIP58 basic leucine-zipper 58 (.1) AT5G15830 58 / 5e-11 bZIP ATBZIP3 basic leucine-zipper 3 (.1) AT3G49760 57 / 8e-11 bZIP ATBZIP5 basic leucine-zipper 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010005 [exp] 298 / 1e-105 AT3G62420 164 / 1e-52 basic region/leucine zipper motif 53 (.1) Lus10024279 [exp] 107 / 5e-30 AT1G75390 166 / 6e-53 basic leucine-zipper 44 (.1.2) Lus10001347 [exp] 103 / 2e-28 AT1G75390 159 / 4e-50 basic leucine-zipper 44 (.1.2) Lus10040428 [exp] 97 / 8e-26 AT1G75390 148 / 8e-46 basic leucine-zipper 44 (.1.2) Lus10041780 [exp] 95 / 6e-25 AT1G75390 135 / 2e-40 basic leucine-zipper 44 (.1.2) Lus10028333 [exp] 91 / 2e-23 AT1G75390 134 / 5e-40 basic leucine-zipper 44 (.1.2) Lus10016884 [exp] 81 / 8e-20 AT5G49450 80 / 8e-20 basic leucine-zipper 1 (.1) Lus10037750 [exp] 77 / 2e-18 AT5G49450 85 / 1e-21 basic leucine-zipper 1 (.1) Lus10011722 [exp] 67 / 6e-14 AT3G49760 120 / 2e-34 basic leucine-zipper 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120800 [exp] 187 / 6e-62 AT3G62420 161 / 8e-52 basic region/leucine zipper motif 53 (.1) Potri.002G196200 [exp] 181 / 3e-59 AT3G62420 182 / 3e-60 basic region/leucine zipper motif 53 (.1) Potri.005G231300 [exp] 116 / 7e-34 AT1G75390 172 / 2e-55 basic leucine-zipper 44 (.1.2) Potri.004G158200 [exp] 115 / 2e-33 AT1G75390 152 / 8e-48 basic leucine-zipper 44 (.1.2) Potri.009G119700 [exp] 114 / 6e-33 AT4G34590 154 / 9e-49 Arabidopsis thaliana basic leucine-zipper 11, G-box binding factor 6 (.1) Potri.007G019900 [exp] 107 / 5e-30 AT1G75390 130 / 5e-39 basic leucine-zipper 44 (.1.2) Potri.002G031900 [exp] 105 / 1e-29 AT1G75390 128 / 3e-38 basic leucine-zipper 44 (.1.2) Potri.005G119300 [exp] 100 / 3e-27 AT2G18160 130 / 3e-39 G-BOX BINDING FACTOR 5, basic leucine-zipper 2 (.1) Potri.010G142900 [exp] 92 / 2e-24 AT5G49450 85 / 7e-22 basic leucine-zipper 1 (.1) Potri.008G106700 [exp] 87 / 2e-22 AT3G62420 88 / 6e-23 basic region/leucine zipper motif 53 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10025024 pacid=23148470 polypeptide=Lus10025024 locus=Lus10025024.g ID=Lus10025024.BGIv1.0 annot-version=v1.0 ATGTCTGGATCAGCATCATCGCAGAGGCAGCCGGCGAGCTCAGGATCCGATACGGATCCTCGCTACGCGAACGTCGCCGACGAGAGGAAGAGGAAGAGGA TGATATCGAACAGAGAGTCCGCTAGACGGTCGAGGATGAGGAAGCAGAAGCAGGTGGAAGATCTGGTGAGCGAGACGAGCCAGCTGCAGAAGGAAAATGA GCAGATCAGGAGACAGGTCGAGGTCAGCGGACAGAGGTATGTGGAAATGGAATCGGCGAACAACGTCCTCAAGGCTCAGGCGATGGAGCTTACCGATAGG CTGAGGTCTCTGAACTCCGTGCTGGAGATCGTCGAGGCTGTTAGCGGATTGGACGTCGATATCCCGGAGATGCCTGACGACCGTTTGTTCGAACCGTGGG TCTCCGTCCAGCAGCAGCCGATCATGGCATCCGTCGCTGCCGCCGGCGATACGCTGGAGTATTAA
AA sequence Show only first row Show all	>Lus10025024 pacid=23148470 polypeptide=Lus10025024 locus=Lus10025024.g ID=Lus10025024.BGIv1.0 annot-version=v1.0 MSGSASSQRQPASSGSDTDPRYANVADERKRKRMISNRESARRSRMRKQKQVEDLVSETSQLQKENEQIRRQVEVSGQRYVEMESANNVLKAQAMELTDR LRSLNSVLEIVEAVSGLDVDIPEMPDDRLFEPWVSVQQQPIMASVAAAGDTLEY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10025024 [exp]	0	1
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10010005 [exp]	1.0	0.9685
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	4.2	0.9411
AT3G63420		AGG1, ATAGG1	Ggamma-subunit 1 (.1.2)		Lus10042727 [exp]	4.2	0.9215
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	4.5	0.9287
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	7.9	0.9409
AT2G10950			BSD domain-containing protein ...		Lus10039982 [exp]	10.0	0.9367
AT2G32190			unknown protein		Lus10039015 [exp]	10.1	0.9280
AT5G45920			SGNH hydrolase-type esterase s...		Lus10013941 [exp]	11.2	0.9192
AT2G32070			Polynucleotidyl transferase, r...		Lus10018330 [exp]	12.6	0.9221
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Lus10030760 [exp]	13.7	0.9212

Compare expression of checked genes

Lus10025024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.