Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47390 1268 / 0 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010007 [exp] 1536 / 0 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10025027 [exp] 1414 / 0 AT2G47390 1330 / 0.0 Prolyl oligopeptidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120600 [exp] 1294 / 0 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G196000 [exp] 1291 / 0 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.012G014900 [exp] 44 / 0.0005 AT5G24260 1027 / 0.0 prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10025026 pacid=23148418 polypeptide=Lus10025026 locus=Lus10025026.g ID=Lus10025026.BGIv1.0 annot-version=v1.0 ATGACCACGCGCTTTCACAAAGTCTACAATCGCCTCTCTCTCCTCACCCTCTCCCCTCTCCCTTCGCCACCGCATCCTCCTCAATTCCCCGCCGCCCTCG ACTTCTATCTCCGCCGATTCACCTCCGCCCGCCTCCGAACTCAGTCTCCCCGACGGCAGCGCCGCAGCAGCAGCTCGTCATCGTTCATGTCGTCCGCCGA TTCTCGTCTCCGTAACTTCGCCCCGATCAGTTCGTCAGCTGAAGATGCTGTTCGCGGCGTCTCCAACGGCGGCGCTACTGCTTCCGTCGACGACTACGAA GTAGAAGGGATGGAAGGAAAGTATCGACTTCCACCGCCGGAGATAAGGGACATTGTTGATGCACCGCCTCTCCCTGCATTGTCATTTTCACCTCATAGGG ATAAAATTCTGTTTCTGAAGCGGAGGGCGTTGGCTCCACTGTCGGAATTAGCAAGACCGGAGGAGAAACTGGCTGGTATGCGTATAGATGGGCTGTGTAA CTCTATGAGCAGGATGTCGTACTATACTGGAATCGGTGTTCATCAGTTAGTGGATGATGGTACCCTGGGGCCGGAGAGGGAGATTTATGGGTTCCCCGAA GGTTCCAAGATCAATTTCATTACTTTTTCGCCCAATGGTAGGCATTTATGCTTCAGCATCCGTCTTGAAGATGAGGATAACAACAGTAGTAAACTCACTG TATGGGTTGCTGATATCGAAACTGGACAGGCTAGACCTTTGTTTCAGTCGCCCGATGTTTATCTAAATGCTGTTTTTGAAAATTTCGTGTGGGTGGATGA TTCAACTTTGCTAGTTTGCACCATCCCAAAGTCTCGAGGAGCACCACTAAAGAAACCTTTGGTTCCACCTGGTCCCAAGATACAGTCCAATGAGACGAAG AGCATTATTCAAGTCAGAACCTTCCAGGATTTGCTGAAGGATGAGTATGACGAAGATTTGTTTGACTACTATGCCACCTCACAACTTGTTTTAGTCTGTC TGGATGGTACTGCGAAGGAGATTGGCACGCCAGCTATTTATACATCAATGGATCCTTCTCCAGACCAGAAGTATATGTTGATCAGTTCCATGCACAGGCC ATACTCCTATATTGTACCGTGTGGAAGATTTCCTAAAAGGGTAGAAGTCTGGACAACCAGTGGCGAATTTGTGCGTGAGCTCTGTGATTTGCCCCTTGCT GAAGACATTCCAATTGCATTCAATAGCGTGCGCAAAGGAATGCGTTCAATCAATTGGAGAGCAGATAAGCCTGCAACTCTTTATTGGGCAGAGACACAAG ATGGAGGTGATGCAAAAGTAGAAGTATCTCCACGAGATATAATCTATACACAGCATGCTGATCCAGCAGAAGGTGAACAGCCAGAAATCCTGCACAAGCT TGATCTTCGCTATTGTGGAATCTCTTGGTGTAATGATTCACTAGCCCTAATTTATGAATCATGGTACAAGACAAGACGGATAAGAACCTGGTTATCTCCA GTAGTCAAAGGTTCTTCTCCACGCATATTATTTGACAGGTCATCTGAGGATGTGTATTCTGATCCCGGTTCCCCCATGCTGAGGAGAACAAGTGCTGGGA CTTATGTGATTGCAACTATAAAGAAAGCAAATGATGATGCCACATATGTTCTACTGAATGGAAGTGGGGCCACACCTGAAGGAAACATTCCATTCCTTGA CCTTTTCGACATAAATACAGGCAACAAGGAACGAATTTGGCAAAGCGACAAAGAAAAGTATTTTGAGACTGCGGTTGCACTTATGTCTGATAACACCGAA GGGGATCTGTGCCTAGATCAGTTAAAGATTTTAACATCCAGAGAATCAAAAACGGAGAACACCCAGTATTATATAAAAAAGTGGCCAGAAAAGACTGAAT TTCAGATCACAAATTTTCCTCATCCATACCCACAGTTGGCGTCCCTGCAAAAGGAGATGATTAGATATCAGAGAAAAGATGGAGTTCAACTGACTGCAAC ATTGTACCTACCACCTGGCTATGATCCGTCAAAAGACGGTCCTCTTCCTTGCCTTTTGTGGTCTTACCCAGGCGAATTTAAGAGCAAAGCAGCTGCGGGA CAGGTTCGTGGCTCTCCTAATGAATTTCCAGGCATAGGCTCTACATCAGCCCTTCTTTGGCTAGCCAGGAGATTTGCCATTTTATCTGGACCAACGATTC CCATTGTTGGAGAGGGCGATGAGGAGGCTAATGACAGGTATGTGGAACAATTAGTTGCAAGTGCCGAGGCAGCTGTTGAGGAAGTCATCCGACGTGGCGT TGCTCATCCCAGAAAAATTGCCATCGGTGGACATAGCTATGGTGCCTTCATGACTGCAAACCTCTTGGCACACGCCCCACATCTTTTCGCCTGTGGAATT GCTCGCTCAGGAGCTTATAACAGAACACTGACACCTTTTGGTTTTCAGAATGAGGAGAGGACTCTCTGGGACGCTACGAAAACCTATGTGGAGATGAGTC CGTTCATGTCAGCAAATAAAATTAAGAAGCCAATATTGCTCATCCATTGCGAAGAAGACAACAACCCGGGAACACTAACCATGCAGGTATGGCCACCGTG TTGGTATCATAAACCCCACGTACCTATAAACCTCTTTACTCGGGTTTGA
AA sequence Show only first row Show all	>Lus10025026 pacid=23148418 polypeptide=Lus10025026 locus=Lus10025026.g ID=Lus10025026.BGIv1.0 annot-version=v1.0 MTTRFHKVYNRLSLLTLSPLPSPPHPPQFPAALDFYLRRFTSARLRTQSPRRQRRSSSSSSFMSSADSRLRNFAPISSSAEDAVRGVSNGGATASVDDYE VEGMEGKYRLPPPEIRDIVDAPPLPALSFSPHRDKILFLKRRALAPLSELARPEEKLAGMRIDGLCNSMSRMSYYTGIGVHQLVDDGTLGPEREIYGFPE GSKINFITFSPNGRHLCFSIRLEDEDNNSSKLTVWVADIETGQARPLFQSPDVYLNAVFENFVWVDDSTLLVCTIPKSRGAPLKKPLVPPGPKIQSNETK SIIQVRTFQDLLKDEYDEDLFDYYATSQLVLVCLDGTAKEIGTPAIYTSMDPSPDQKYMLISSMHRPYSYIVPCGRFPKRVEVWTTSGEFVRELCDLPLA EDIPIAFNSVRKGMRSINWRADKPATLYWAETQDGGDAKVEVSPRDIIYTQHADPAEGEQPEILHKLDLRYCGISWCNDSLALIYESWYKTRRIRTWLSP VVKGSSPRILFDRSSEDVYSDPGSPMLRRTSAGTYVIATIKKANDDATYVLLNGSGATPEGNIPFLDLFDINTGNKERIWQSDKEKYFETAVALMSDNTE GDLCLDQLKILTSRESKTENTQYYIKKWPEKTEFQITNFPHPYPQLASLQKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLLWSYPGEFKSKAAAG QVRGSPNEFPGIGSTSALLWLARRFAILSGPTIPIVGEGDEEANDRYVEQLVASAEAAVEEVIRRGVAHPRKIAIGGHSYGAFMTANLLAHAPHLFACGI ARSGAYNRTLTPFGFQNEERTLWDATKTYVEMSPFMSANKIKKPILLIHCEEDNNPGTLTMQVWPPCWYHKPHVPINLFTRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47390			Prolyl oligopeptidase family p...		Lus10025026 [exp]	0	1
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10026472 [exp]	6.5	0.8711
AT5G60170			RNA binding (RRM/RBD/RNP motif...		Lus10036138 [exp]	11.0	0.8478
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Lus10036371 [exp]	11.1	0.8640
AT1G72390			unknown protein		Lus10013169 [exp]	12.4	0.8509
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	13.6	0.7931
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Lus10031050 [exp]	15.9	0.8647
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	15.9	0.8431
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Lus10000967 [exp]	16.4	0.8556
AT2G44900		ARABIDILLO-1, A...	F-box Armadillo protein 1, ARA...		Lus10028197 [exp]	17.5	0.8510
AT1G63700		EMB71, MAPKKK4,...	YODA, MAP KINASE KINASE KINASE...		Lus10024645 [exp]	21.6	0.7654

Compare expression of checked genes

Lus10025026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.