Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47390 1274 / 0 Prolyl oligopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010007 [exp] 1526 / 0 AT2G47390 1458 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10025026 [exp] 1417 / 0 AT2G47390 1339 / 0.0 Prolyl oligopeptidase family protein (.1) Lus10015363 [exp] 48 / 4e-05 AT4G14570 871 / 0.0 acylamino acid-releasing enzyme, acylaminoacyl-peptidase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G120600 [exp] 1320 / 0 AT2G47390 1466 / 0.0 Prolyl oligopeptidase family protein (.1) Potri.002G196000 [exp] 1320 / 0 AT2G47390 1394 / 0.0 Prolyl oligopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00326 [flax] [poplar] Peptidase_S9 Prolyl oligopeptidase family
Representative CDS sequence Show only first row Show all	>Lus10025027 pacid=23148471 polypeptide=Lus10025027 locus=Lus10025027.g ID=Lus10025027.BGIv1.0 annot-version=v1.0 ATGGAAGGAAAGTATCGACTTCCACCGCCGGAGATAAGGGACATTGTTGATGCACCGCCTCTCCCTGCATTGTCATTTTCACCTCATAGGGATAAAATTC TGTTTCTGAAGCGGAGGGCGTTGGCTCCACTGTCGGAATTAGCAAGACCGGAGGAGAAACTGGCTGGTATGCGTATAGATGGGCTGTGTAACTCTATGAG CAGGATGTCGTACTATACTGGAATCGGTGTTCATCAGTTAGTGGATGATGGTACCCTGGGGCCGGAGAGGGAGATTTATGGGTTCCCCGAAGGTTCCAAG ATCAATTTCATTACTTTTTCGCCCAATGGTAGGCATTTATGCTTCAGCATCCGTCTTGAAGATGAGGATAACAACAGTAGTAAACTCACTGTATGGGTTG CTGATATCGAAACTGGACAGGCTAGACCTTTGTTTCAGTCGCCCGATGTTTATCTAAATGCTGTTTTTGAAAATTTCGTGTGGGTGGATGATTCAACTTT GCTAGTTTGCACCATCCCAAAGTCTCGAGGAGCACCACTAAAGAAACCTTTGGTTCCACCTGGTCCCAAGATACAGTCCAATGAGACGAAGAGCATTATT CAAGTCAGAACCTTCCAGGATTTGCTGAAGGATGAGTATGACGAAGATTTGTTTGACTACTATGCCACCTCACAACTTGTTTTAGTCTGTCTGGATGGTA CTGCGAAGGAGATTGGCACGCCAGCTATTTATACATCAATGGATCCTTCTCCAGACCAGAAGTATATGTTGATCAGTTCCATGCACAGGCCATACTCCTA TATTGTACCGTGTGGAAGATTTCCTAAAAGGGTAGAAGTCTGGACAACCAGTGGCGAATTTGTGCGTGAGCTCTGTGATTTGCCCCTTGCTGAAGACATT CCAATTGCATTCAATAGCGTGCGCAAAGGAATGCGTTCAATCAATTGGAGAGCAGATAAGCCTGCAACTCTTTATTGGGCAGAGACACAAGATGGAGGTG ATGCAAAAGTAGAAGTATCTCCACGAGATATAATCTATACACAGCATGCTGATCCAGCAGAAGGTGAACAGCCAGAAATCCTGCACAAGCTTGATCTTCG CTATTGTGGAATCTCTTGGTGTAATGATTCACTAGCCCTAATTTATGAATCATGGTACAAGACAAGACGGATAAGAACCTGGTTATCTCCAGTAGTCAAA GGTTCTTCTCCACGCATATTATTTGACAGGTCATCTGAGGATGTGTATGCTGATCCCGGTTCCCCCATGCTGAGGAGAACACGTGCTGGGACTTATGTGA TTGCAACTATAAAGAAAGCAAATGATGATGCCACATATGTTCTACTGAATGGAAGTGGGGCCACACCTGAAGGAAACATTCCATTCCTTGACCTTTTCGA CATAAATACAGGCAACAAGGAACGAATTTGGCAAAGCGACAAAGAAAAGTATTTTGAGACTGCGGTTGCACTTATGTCTGATAACACCGAAGGGGATCTG TGCCTAGATCAGTTAAAGATTTTAACATCCAGAGAATCAAAAACGGAGAACACCCAGTATTATATAAAAAAGTGGCCAGAAAAGACTGAATTTCAGATCA CAAATTTTCCTCATCCATACCCACAGTTGGCGTCCCTGCAAAAGGAGATGATTAGATATCAGAGAAAAGATGGAGTTCAACTGACTGCAACATTGTACCT ACCACCTGGCTATGATCCGTCAAAAGACGGTCCTCTTCCTTGCCTTTTGTGGTCTTACCCAGGCGAATTTAAGAGCAAAGCAGCTGCGGGACAGGTTCGT GGCTCTCCTAATGAATTTCCAGGCATAGGCTCTACGTCAGCCCTTCTTTGGCTAGCTAGGAGATTTGCCATTTTATCTGGACCAACGATTCCCATTGTTG GAGAGGGCGATGAGGAGGCTAATGACAGGTATGTAGAACAATTAGTTGCAAGTGCCGAGGCAGCCGTTGAGGAAGTCATCCGACGTGGCGTTGCTCATCC CAGAAAAATTGCCATCGGTGGACATAGCTATGGTGCCTTCATGACTGCAAACCTCTTGGCACACGCCCCACATCTTTTCGCCTGTGGAATTGCTCGCTCA GGAGCTTATAACAGAACACTGACACCTTTTGGTTTTCAGTCCGATCGATTCTTCAACGCTCTAAAAGGTCATGGTGCGCTGGCTCGCTTAGTCATTCTTC CCTATGAGAGTCATGGCTATGCTGCCAGAGAGAGCATCATGCACGTCCTCTGGGAAACTGACCGGTGGCTGCAGAAGTATTGCGTCTCGAACACCTCTGA TATAAATGCTGAGCTTGATGCGTCTAAAGCCGATCCCAGCAAAGAAACCAAAGATGACGAGGGTAAAGTAGTAGCTTCCAGTGGAGGTGGAGGAGATCCA GAGCTCAAAGATGACGAGGGTAAAGTAGTAGCTTCCAGTGGAGGTGGAGGAGATCCAGAGCTGGCAGACGACGAGCATGAATCGGGTTATCGTCGCTCCC TACCAAGATCTTCATTATGGTAA
AA sequence Show only first row Show all	>Lus10025027 pacid=23148471 polypeptide=Lus10025027 locus=Lus10025027.g ID=Lus10025027.BGIv1.0 annot-version=v1.0 MEGKYRLPPPEIRDIVDAPPLPALSFSPHRDKILFLKRRALAPLSELARPEEKLAGMRIDGLCNSMSRMSYYTGIGVHQLVDDGTLGPEREIYGFPEGSK INFITFSPNGRHLCFSIRLEDEDNNSSKLTVWVADIETGQARPLFQSPDVYLNAVFENFVWVDDSTLLVCTIPKSRGAPLKKPLVPPGPKIQSNETKSII QVRTFQDLLKDEYDEDLFDYYATSQLVLVCLDGTAKEIGTPAIYTSMDPSPDQKYMLISSMHRPYSYIVPCGRFPKRVEVWTTSGEFVRELCDLPLAEDI PIAFNSVRKGMRSINWRADKPATLYWAETQDGGDAKVEVSPRDIIYTQHADPAEGEQPEILHKLDLRYCGISWCNDSLALIYESWYKTRRIRTWLSPVVK GSSPRILFDRSSEDVYADPGSPMLRRTRAGTYVIATIKKANDDATYVLLNGSGATPEGNIPFLDLFDINTGNKERIWQSDKEKYFETAVALMSDNTEGDL CLDQLKILTSRESKTENTQYYIKKWPEKTEFQITNFPHPYPQLASLQKEMIRYQRKDGVQLTATLYLPPGYDPSKDGPLPCLLWSYPGEFKSKAAAGQVR GSPNEFPGIGSTSALLWLARRFAILSGPTIPIVGEGDEEANDRYVEQLVASAEAAVEEVIRRGVAHPRKIAIGGHSYGAFMTANLLAHAPHLFACGIARS GAYNRTLTPFGFQSDRFFNALKGHGALARLVILPYESHGYAARESIMHVLWETDRWLQKYCVSNTSDINAELDASKADPSKETKDDEGKVVASSGGGGDP ELKDDEGKVVASSGGGGDPELADDEHESGYRRSLPRSSLW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	0	1
AT3G19780			unknown protein		Lus10040970 [exp]	3.5	0.8111
AT2G05710		ACO3	aconitase 3 (.1)		Lus10015116 [exp]	4.2	0.7840
AT5G57160		ATLIG4	DNA ligase IV (.1)		Lus10020013 [exp]	6.3	0.7785
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10024327 [exp]	7.6	0.8266
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Lus10038373 [exp]	12.1	0.7793
AT2G47390			Prolyl oligopeptidase family p...		Lus10025026 [exp]	13.6	0.7931
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	14.4	0.7911
AT1G15780			unknown protein		Lus10025452 [exp]	17.7	0.7292
AT1G04830			Ypt/Rab-GAP domain of gyp1p su...		Lus10017104 [exp]	21.0	0.7202
AT1G79750		ATNADP-ME4	Arabidopsis thaliana NADP-mali...		Lus10037561 [exp]	21.4	0.6624

Compare expression of checked genes

Lus10025027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.