Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02070 299 / 8e-86 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 177 / 3e-45 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G18524 117 / 1e-26 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G25540 115 / 4e-26 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT4G17380 91 / 2e-18 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 89 / 7e-18 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 76 / 7e-14 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT1G65070 54 / 4e-07 DNA mismatch repair protein MutS, type 2 (.1.2) AT5G54090 52 / 2e-06 DNA mismatch repair protein MutS, type 2 (.1) AT1G15940 48 / 4e-05 Tudor/PWWP/MBT superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010010 [exp] 424 / 1e-130 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10017724 [exp] 171 / 1e-43 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10005743 [exp] 125 / 3e-29 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10027452 [exp] 119 / 1e-28 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 119 / 4e-27 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 118 / 8e-27 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10033095 [exp] 108 / 1e-23 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10028966 [exp] 92 / 3e-19 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10014462 [exp] 75 / 2e-13 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121701 [exp] 310 / 2e-89 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.014G121601 [exp] 218 / 1e-61 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G190950 [exp] 169 / 2e-46 AT4G02070 410 / 2e-133 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G159200 [exp] 160 / 5e-40 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 160 / 5e-40 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.015G142900 [exp] 121 / 7e-28 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.012G060000 [exp] 121 / 8e-28 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.008G191051 [exp] 93 / 7e-21 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.001G156200 [exp] 96 / 4e-20 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Potri.011G089500 [exp] 86 / 5e-17 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [flax] [poplar] MutS_I MutS domain I CL0023 [flax] [poplar] P-loop_NTPase PF00488 [flax] [poplar] MutS_V MutS domain V CL0023 [flax] [poplar] PF05192 [flax] [poplar] MutS_III MutS domain III CL0023 [flax] [poplar] PF05190 [flax] [poplar] MutS_IV MutS family domain IV
Representative CDS sequence Show only first row Show all	>Lus10025030 pacid=23148443 polypeptide=Lus10025030 locus=Lus10025030.g ID=Lus10025030.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCAAAGAAACGATCCGCTGACCGATTGCCGCTGGTGAATCAGCAATCGCAGATCACTTCCTTCTTCACTAAATGGACCAACTCGTCTTCTC CTTCGCCTTCTCCCTCGCCTTCTCCGTCTGTATTGAAACAGACAAAAATAAAACCCCAATCCAACATCAGCAACCCTAACCCTATCTCTCCGAGTCCGTC TCACTCTCCTGTAACTCCTTCTCCAATCCAATCCAGCTTCAAGAAGCCTCTCCTCGTCATCGGAAAAAGCTCTTATCCGTCAACGCCTGAGGTCGGTGTG GGAACCTACGGGAAGGAGGTGGTGGATAAGAGGATTAGGGTTTATTGGCCGCTGGACAAGGCCTGGTACGAAGGCTGTGTGAAGTCCTATGACAAGGGTT CCGACGATGGAGAAGATTTGGAGGACATTGAGGAGGAGAATGGCGGTGGTGGCGATAGTCATGGTGATGATTCCAGTGATGAAGATTGGGGAAAGAATGT GGTGGAAGAAGTCAGCGATGGCGAAGAGGACCAAATGGATCTGGAAGAAGAGGATGAGGATGATGCCGGAGAGTTAAAGAGAGTAGGGAAGCAAGCAGTG AAGAGCGCGAAGAAGATTGACTCGAGAAAACGGAAGGGAAGTTCTGAAGTGACGGTGGATTCTGGTAAGAAGAGCAGGAAAAATGGAGAATTGCGTACAG AAGCGTTGAAATTCCCAGCCTTGGAGCCAGTAAAGAATGCGCATACTGGAGAAACCGATGCATTGGGAAGATTCGAGATCAAGGTTGTGGAAGGCGTAAG GCGAAGACGTAGAGATGCAAAAAGAAGACTCCCTACAGACGTAGACTATGATCCTAGGACCCTATACTTGCCTCCTGATTTTGTAAGGAGTTTATCTGAT GGCCAGGTATGTGCTGATAATGCTAAGAAAGTGGTTTGGAGATGTAATTTTTTTGGGGCAAGTTTCGAGATGCAATGTCTGGTTGTCTTAACTTTATCGC CTATTATACAGAAGCAATGGTGGGAGTTTAAGTCCAAGCACATGGACAAGGTTTTATTCTTCAAGATGGGAAAGTTTTACGAGCTTTTTGAAATGGATGC TCATATAGGAGCTAAAGAACTAGACTTGCAGTATATGAAGGGAGAACAACCACATTGTGGGTTTCCGGAGAAGAACTTTTCAATGAATGTAGAGAAATTG GCTAGAAAAGTTGCTGTTATGACTAAGCAGGGCTATCGAGTTCTTGTGGTGGAGCAGACTGAAACACCTGATCAGCTAGAGTATCGTCGCAAAGAGAAAG GCTCTAAGGACAAGATCTGCGAAATTCGAACGACTCCCAGCTCTGAATTTTGCGATGTTGCTCAAAAACCGTATATGATTCTTGATGCTTCTGCCCTTGA AAACCTTGAGATTTTCGAGAACAACATAACGGGAGACTCATTTGGGACGCTATATGCTCAAATAAATCATTGTGTGACTGCATTTGGAAAGAGGTTACTT AAAATGTGGCTTGCAAGACCTTTATATCATGTTAAATCTATCAAGGATCGCCAGGATGCTGTCTCAGATTTACAGGTGACCAATCGAACAATGGCACTTG AATTCCGGAAAGCATTGTTTAGGCTGCCAGACATGGAGAGACTGCTTACCCGTATGTTTGCCTGTGAAGGTCTTCTTGATATCAATTCAGTTCTTAATTA TTTTAAGGATGGTTTTGATTGGGTGGAAGCGAACAACACTGGTTGTATAATACCCCACGAGGGAGTTGATATGGTGTATGACTCTGCTTGTAAGAACGTC CAAGATATTGTATCTGGTCTGAAAAAAGAACTGAAGGAACAGCGAAAGATCCTTGGAGATGCATCTATAACTTACGTCACGGTTGGGAAAGATGCATATT TATCGGAAGTTCCAGAACATATGAGTGAAAGTATCCCTCAAGAATATGAGCTACGTTCATCAAAAAAGATAGGAGCTGATGTCCCTGATGAGAGCTTTGA GTTGTCACCTGTTGACCGGATCTTTGTCCGTATGGGTGCCAAAGATCACATTATGGCTGGCCAAAGTAAATTTTTAACTGAGCTTTCAGAAACTGCATTA ATGTTGTCATCAGCAACCCGTAATTCGTTGGTGGCCCTTGATGAACTTGGACGCGGCACTTCAGCTTCAGATGGACAAGCAATAGCTGAAGCTGTTCTTG ACCATTGTGTAAACAAGGTGCAGTGCCGTGGAATGTTCTCCACTCACTATCACAGATTAGCCGTAGACTATGAAAAGGATCCCAAGGTATCGTTATGCCA TATGGCATGTAAAATTGGTGTTGGAGCTGGTGGAGTGGAAGAAGTAACATTTCTGTATAGAATAACACCCGGTGCTTGCCCTAAGAGCTACGGTGTCAAT GTTGCAAGACTGGCAGGCCTTCCTGAACAAGTGCTTCAGATAGCTGCTGCTAAGTCTAGCGAAATCGAAGCCCTCTACGGTAAGCACTTGAAGGAAGGCA CGGTGATCAAGGAGAATCAAAGTTCAAATTATGCAGCGTTAGGTAGCATCCTTAATTTGGTCACTGGCACAATAAAGTCCGAGCCTTCTCCGGGTATTTG TATCAGTCACCTGATTGAACACCAGCACCAAGCAAGAACACTTCTGCTCCAAAACTGA
AA sequence Show only first row Show all	>Lus10025030 pacid=23148443 polypeptide=Lus10025030 locus=Lus10025030.g ID=Lus10025030.BGIv1.0 annot-version=v1.0 MSSSKKRSADRLPLVNQQSQITSFFTKWTNSSSPSPSPSPSPSVLKQTKIKPQSNISNPNPISPSPSHSPVTPSPIQSSFKKPLLVIGKSSYPSTPEVGV GTYGKEVVDKRIRVYWPLDKAWYEGCVKSYDKGSDDGEDLEDIEEENGGGGDSHGDDSSDEDWGKNVVEEVSDGEEDQMDLEEEDEDDAGELKRVGKQAV KSAKKIDSRKRKGSSEVTVDSGKKSRKNGELRTEALKFPALEPVKNAHTGETDALGRFEIKVVEGVRRRRRDAKRRLPTDVDYDPRTLYLPPDFVRSLSD GQVCADNAKKVVWRCNFFGASFEMQCLVVLTLSPIIQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELDLQYMKGEQPHCGFPEKNFSMNVEKL ARKVAVMTKQGYRVLVVEQTETPDQLEYRRKEKGSKDKICEIRTTPSSEFCDVAQKPYMILDASALENLEIFENNITGDSFGTLYAQINHCVTAFGKRLL KMWLARPLYHVKSIKDRQDAVSDLQVTNRTMALEFRKALFRLPDMERLLTRMFACEGLLDINSVLNYFKDGFDWVEANNTGCIIPHEGVDMVYDSACKNV QDIVSGLKKELKEQRKILGDASITYVTVGKDAYLSEVPEHMSESIPQEYELRSSKKIGADVPDESFELSPVDRIFVRMGAKDHIMAGQSKFLTELSETAL MLSSATRNSLVALDELGRGTSASDGQAIAEAVLDHCVNKVQCRGMFSTHYHRLAVDYEKDPKVSLCHMACKIGVGAGGVEEVTFLYRITPGACPKSYGVN VARLAGLPEQVLQIAAAKSSEIEALYGKHLKEGTVIKENQSSNYAALGSILNLVTGTIKSEPSPGICISHLIEHQHQARTLLLQN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Lus10025030 [exp]	0	1
					Lus10028962 [exp]	9.2	0.6262
AT5G03770		AtKdtA, KDTA	KDO transferase A (.1)		Lus10017662 [exp]	26.8	0.5909
					Lus10031358 [exp]	38.7	0.5613
AT3G22490			Seed maturation protein (.1)		Lus10010553 [exp]	66.9	0.5486
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	82.7	0.5120
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020588 [exp]	108.2	0.4865
AT2G28480			RNA-binding CRS1 / YhbY (CRM) ...		Lus10034313 [exp]	116.1	0.5005
AT5G18020			SAUR-like auxin-responsive pro...		Lus10027690 [exp]	189.1	0.4724
					Lus10003927 [exp]	235.5	0.4739

Compare expression of checked genes

Lus10025030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.