Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02610 175 / 9e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 164 / 2e-50 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 120 / 5e-33 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT2G02960 117 / 6e-32 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 115 / 6e-31 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 110 / 6e-29 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G38070 105 / 2e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 101 / 8e-26 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G32670 54 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 53 / 5e-08 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010011 [exp] 368 / 9e-131 AT1G02610 174 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10004058 [exp] 135 / 5e-39 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 130 / 1e-36 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10012826 [exp] 117 / 1e-31 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10035010 [exp] 114 / 2e-30 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10021670 [exp] 110 / 9e-29 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10036754 [exp] 105 / 3e-27 AT2G02960 315 / 1e-108 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10019102 [exp] 105 / 4e-27 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034454 [exp] 105 / 5e-27 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121900 [exp] 221 / 1e-72 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 187 / 1e-59 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G093500 [exp] 139 / 3e-40 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 137 / 1e-39 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 133 / 3e-38 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 125 / 6e-35 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 113 / 4e-30 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 101 / 1e-25 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 84 / 1e-19 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 83 / 4e-19 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger) CL0229 [flax] [poplar] PF12428 [flax] [poplar] DUF3675 Protein of unknown function (DUF3675)
Representative CDS sequence Show only first row Show all	>Lus10025031 pacid=23148425 polypeptide=Lus10025031 locus=Lus10025031.g ID=Lus10025031.BGIv1.0 annot-version=v1.0 ATGGGTGAATCAGTCCTTCTGTGGATAATCGACGGGGACCACCATCCTCCTCCGTCAAGCTCAGGCAGCAGCTCCACAGCGGCGTACTGCAGGATTTGCC ACGAAGCCGAATTCGAAAGCTTCAAGAGCTTGGAAGCTCCCTGTTCTTGCTCTGGAACCGTCAAGTATGCGCACAGAGATTGTATACAGAGATGGTGCGA CGAGAAAGGGAACACAATCTGCGAAATCTGCCTTCAGAAGTATGAACCAGGATACACGGCGGCCGTTGAAATATCGTCGAAGAAAGCTGAGATGTTTGAG GAATCGGATAGCAGAGATAGCTTGGATATGTTGACAACAAGGGAAGAAGAACTGGTGCCACAAGTGGGTCTACGCCACGTGGCGGAAGAATATTTGGAAC CCACCTCCGCCGCCGATAGAACCGCCGCTGTCTGCCGTTCCTTGGCTTTAACGTTCACATTCATTCTGTTGGTGAGACATTCATTTCAAACACTCGTCGG CGGGGCGAAAGAAGAGTATCCCTTCGCACTCATCACAGTACTCGTACTAAGGGCTAGTGGCATTGTTTTCCCTATGTACATTATACTCCGGGTTATATCA TCCCTCCAGAAGACCATTCATCGAAGACATCAGGGTTGTGATGATGAAGAGGAAGATGAAGCAGCCACCTTCGACGAAGAAGAGCAGCTGCACTTAGTAT AG
AA sequence Show only first row Show all	>Lus10025031 pacid=23148425 polypeptide=Lus10025031 locus=Lus10025031.g ID=Lus10025031.BGIv1.0 annot-version=v1.0 MGESVLLWIIDGDHHPPPSSSGSSSTAAYCRICHEAEFESFKSLEAPCSCSGTVKYAHRDCIQRWCDEKGNTICEICLQKYEPGYTAAVEISSKKAEMFE ESDSRDSLDMLTTREEELVPQVGLRHVAEEYLEPTSAADRTAAVCRSLALTFTFILLVRHSFQTLVGGAKEEYPFALITVLVLRASGIVFPMYIILRVIS SLQKTIHRRHQGCDDEEEDEAATFDEEEQLHLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10025031 [exp]	0	1
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10010011 [exp]	1.7	0.8956
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	7.7	0.8368
AT1G60690			NAD(P)-linked oxidoreductase s...		Lus10041184 [exp]	12.9	0.8806
AT5G35180			Protein of unknown function (D...		Lus10019585 [exp]	13.5	0.8444
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	17.9	0.8227
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Lus10012550 [exp]	19.1	0.8507
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	21.1	0.8644
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	21.2	0.8535
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	25.1	0.8192
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	27.6	0.8039

Compare expression of checked genes

Lus10025031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.