Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02520 409 / 4e-133 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT1G02530 403 / 9e-131 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT4G01830 394 / 2e-127 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT3G62150 388 / 4e-125 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 385 / 8e-124 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT4G01820 374 / 3e-120 ABCB3, MDR3, PGP3 ATP-binding cassette B3, P-glycoprotein 3 (.1) AT4G18050 340 / 2e-107 ABCB9, PGP9 ATP-binding cassette B9, P-glycoprotein 9 (.1) AT5G46540 339 / 6e-107 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28860 254 / 3e-76 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT1G10680 253 / 1e-75 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010012 [exp] 520 / 5e-176 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 460 / 8e-153 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009989 [exp] 459 / 4e-152 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10010067 [exp] 445 / 2e-146 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004519 [exp] 412 / 9e-143 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038049 [exp] 417 / 9e-136 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009988 [exp] 414 / 1e-134 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 410 / 2e-133 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10004530 [exp] 363 / 2e-121 AT1G02520 682 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G113500 [exp] 428 / 6e-140 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187500 [exp] 419 / 8e-137 AT3G62150 1860 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113200 [exp] 417 / 1e-135 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113000 [exp] 416 / 1e-135 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.002G187400 [exp] 412 / 6e-134 AT3G62150 1702 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113100 [exp] 405 / 2e-131 AT1G02520 1773 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Potri.010G003000 [exp] 391 / 3e-126 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.001G354900 [exp] 363 / 9e-116 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1) Potri.001G139600 [exp] 256 / 5e-77 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.003G094400 [exp] 256 / 5e-77 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10025032 pacid=23148451 polypeptide=Lus10025032 locus=Lus10025032.g ID=Lus10025032.BGIv1.0 annot-version=v1.0 ATGTACGAGGAAGCGAGCCAAGTTGCGAATGATGCGGTGGGGAACATAAGAACGGTAGCTTCCTTCTGTGCTGAAGAGAAAGTGACGGAACTGTACAGAA AGAAATGTGAAGGGCCAGTGAAAACTGGGGTGAAGCAAGGACTCATAAGTGGTATTGGGCTAGGGTTGTCTTCCTCGTTTCTCTACTCATTCTTGGCTAT TAGTTTCTACATTGGAGCTATACTGGTTAACCATGGAGATGCAACATTTACAGATGTTTTCCAAGTGTTCTTTGCTTTGACAATGGCATCAAACGGAATT GCTCGCAACACTGGAACCGACACATCAAGGGCAAAAGCAGCAGCCGCTTCTGTGTTCTCAATCATAGATAGAAAGTCTCAGATTGACTCGAGCGACGAAT TCGGAATGATCCTCGAAAATGTGAAAGGAGATATCAAGCTTGTTCGTCTCAGCTTCAGGTACCCTTCCAGGCCTGACGTTCAAATCTTCAGAGACATCAA CTTGGCCATCCACTCCGGACAAATGGTCGGATTGGTGGTAGAAAGCAGGAGCGGGAAATCAACGGTGATATCACTACTTCAAAGATTCTACGATCTAGAT TCAGGATACATCACATTGGATGGAATCGAGATAAAAAACCTCCAATTAAAATGGTTGAGGAAGAAAATGGGCCTAGTGGGCCAGGAACCGTTGCTTTTCA ACGACATGATCCAGGCCAACATTGCGTACGACAAAGAAGGGGATGCTACAGAGGCAGAGATCGTTTCGGCATCCAAGCTGGCCAATGCACACGGGTTCAT CAGCGGGCTACGGGATGGGTACGGCACGTCTGGCGGGCAGAAGCAGAGGGTGGCGATAGCTCGAGCTATCGTAAAGGGTCCGAAGGTATTGCTTCTTGAC GAGGCGACAAGTGCGTTGGATGCAGAGTCAGAGAAGTGGTGCAGGACGCGTTGGATCGTGTCATGGTGGGCCGGGCGACGGTGGTGGTGGCCCACAGGCT GTCAACGGGTAAGAAAGCGGATCTGA
AA sequence Show only first row Show all	>Lus10025032 pacid=23148451 polypeptide=Lus10025032 locus=Lus10025032.g ID=Lus10025032.BGIv1.0 annot-version=v1.0 MYEEASQVANDAVGNIRTVASFCAEEKVTELYRKKCEGPVKTGVKQGLISGIGLGLSSSFLYSFLAISFYIGAILVNHGDATFTDVFQVFFALTMASNGI ARNTGTDTSRAKAAAASVFSIIDRKSQIDSSDEFGMILENVKGDIKLVRLSFRYPSRPDVQIFRDINLAIHSGQMVGLVVESRSGKSTVISLLQRFYDLD SGYITLDGIEIKNLQLKWLRKKMGLVGQEPLLFNDMIQANIAYDKEGDATEAEIVSASKLANAHGFISGLRDGYGTSGGQKQRVAIARAIVKGPKVLLLD EATSALDAESEKWCRTRWIVSWWAGRRWWWPTGCQRVRKRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10025032 [exp]	0	1
AT1G22540			Major facilitator superfamily ...		Lus10001287 [exp]	2.4	0.8577
					Lus10018970 [exp]	5.1	0.8458
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	6.5	0.8289
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	12.0	0.8203
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10021873 [exp]	13.4	0.7249
AT1G48320			Thioesterase superfamily prote...		Lus10036869 [exp]	14.0	0.8282
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	14.7	0.7920
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025413 [exp]	18.0	0.8134
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	19.5	0.6889
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	23.5	0.7914

Compare expression of checked genes

Lus10025032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.